Variant report

Variant	nsv888268
Chromosome Location	chr7:63711287-63761081
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF680-15	chr7:63754887-63755097	NONHSAT120990
2	lnc-ZNF680-16	chr7:63748767-63748921	NONHSAT120989
3	lnc-ZNF680-16	chr7:63749814-63749869	NONHSAT120989
4	lnc-ZNF680-15	chr7:63759918-63759938	NONHSAT120990

Extended variants
information (count: 253 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:253 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75120535	chr7:63715612-63715613	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs144344125	chr7:63715678-63715679	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs564652037	chr7:63715689-63715690	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs541909745	chr7:63715781-63715782	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs571577894	chr7:63723650-63723651	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs542145925	chr7:63723706-63723707	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs561815922	chr7:63723726-63723727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs537068376	chr7:63723731-63723732	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs557664787	chr7:63723760-63723761	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs113419366	chr7:63723766-63723767	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs571008875	chr7:63725600-63725601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs35638959	chr7:63725626-63725627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556647629	chr7:63725762-63725763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184164154	chr7:63725770-63725771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs140984708	chr7:63725884-63725885	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs188518613	chr7:63725887-63725888	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs146475309	chr7:63726017-63726018	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs573094210	chr7:63726058-63726059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs545184779	chr7:63726149-63726150	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs76466159	chr7:63726151-63726152	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs150208297	chr7:63726166-63726167	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs180977342	chr7:63726179-63726180	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs561387175	chr7:63726184-63726185	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs185006343	chr7:63726204-63726205	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs546714170	chr7:63726208-63726209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs560832580	chr7:63726221-63726222	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs10262403	chr7:63726230-63726231	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs552841085	chr7:63726276-63726277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs569069333	chr7:63726286-63726287	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs78910755	chr7:63726304-63726305	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs34820725	chr7:63726334-63726335	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs113302066	chr7:63726341-63726342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs530487686	chr7:63726346-63726347	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs550233697	chr7:63726353-63726354	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs567051687	chr7:63726354-63726355	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs138810163	chr7:63726360-63726361	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs17139320	chr7:63726370-63726371	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs371012818	chr7:63726378-63726379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs200084707	chr7:63726408-63726409	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs552739484	chr7:63726449-63726450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs377418538	chr7:63726503-63726504	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs370180306	chr7:63726505-63726506	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs41403344	chr7:63726507-63726508	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs538515952	chr7:63726511-63726512	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs540363905	chr7:63726534-63726535	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs375602152	chr7:63726538-63726539	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs1830035	chr7:63726645-63726646	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs371775226	chr7:63726647-63726648	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs376022989	chr7:63726662-63726663	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs368388059	chr7:63726668-63726669	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63715600-63715800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:63723600-63723800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:63725600-63725800	Weak transcription	NHDF-Ad	bronchial
4	chr7:63725800-63728600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:63726200-63726400	ZNF genes & repeats	NHDF-Ad	bronchial
6	chr7:63731800-63732200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:63738000-63738400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr7:63742600-63743000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr7:63759800-63762200	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links