Variant report

Variant	nsv888961
Chromosome Location	chr7:109848853-109875729
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:109858826..109860608-chr7:110161184..110163464,2	MCF-7	breast:
2	chr7:109866942..109868597-chr7:109868630..109871136,2	MCF-7	breast:
3	chr7:109848112..109850390-chr7:109852917..109854789,2	K562	blood:
4	chr7:109866942..109868597-chr7:109868630..109871136,2	MCF-7	breast:
5	chr7:109860312..109862571-chr7:109908993..109910664,2	K562	blood:
6	chr7:109848112..109850390-chr7:109852917..109854789,2	K562	blood:
7	chr7:109864222..109866829-chr7:109868862..109870700,2	MCF-7	breast:
8	chr7:109864222..109866829-chr7:109868862..109870700,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRN3-3	chr7:109867882-109868182	NONHSAT122760

No data

Extended variants
information (count: 473 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:473 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17157477	chr7:109848853-109848854	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570156247	chr7:109849011-109849012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531671062	chr7:109849034-109849035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs558728834	chr7:109849057-109849058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs565836288	chr7:109849086-109849087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560541266	chr7:109849091-109849092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs572586065	chr7:109849109-109849110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534964582	chr7:109849131-109849132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs192415123	chr7:109849162-109849163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183864525	chr7:109849222-109849223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs188685852	chr7:109849237-109849238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs550270636	chr7:109849245-109849246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574520004	chr7:109849266-109849267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs545860024	chr7:109849393-109849394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs543385901	chr7:109849403-109849404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs115776885	chr7:109849413-109849414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572822628	chr7:109849436-109849437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs181467208	chr7:109849438-109849439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs545539025	chr7:109849493-109849494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs565140387	chr7:109849498-109849499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs527874009	chr7:109849531-109849532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs375916769	chr7:109849549-109849550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564552471	chr7:109849557-109849558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs184503957	chr7:109849584-109849585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs62480292	chr7:109849594-109849595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561227915	chr7:109849644-109849645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs367839976	chr7:109849685-109849686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs531499353	chr7:109849705-109849706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150328676	chr7:109849773-109849774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs569912700	chr7:109849775-109849776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs137963505	chr7:109849804-109849805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs190351247	chr7:109849837-109849838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs182207716	chr7:109849850-109849851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534795343	chr7:109849878-109849879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs554932673	chr7:109849903-109849904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs568383813	chr7:109849945-109849946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs187303310	chr7:109849947-109849948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190892572	chr7:109849991-109849992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs576716732	chr7:109850001-109850002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs1723642	chr7:109850022-109850023	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs75836486	chr7:109850082-109850083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs572337399	chr7:109850098-109850099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs144325405	chr7:109850105-109850106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10267937	chr7:109850118-109850119	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs34696839	chr7:109850148-109850149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs397965430	chr7:109850158-109850159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs397890219	chr7:109850213-109850214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565302518	chr7:109850230-109850231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs180992529	chr7:109850232-109850233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543713179	chr7:109850277-109850278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109845200-109851200	Weak transcription	Dnd41	blood
2	chr7:109851200-109851800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:109851200-109852400	Enhancers	Dnd41	blood
4	chr7:109852400-109854200	Weak transcription	Dnd41	blood
5	chr7:109852800-109853200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:109854600-109854800	ZNF genes & repeats	Dnd41	blood
7	chr7:109856200-109857000	Enhancers	Dnd41	blood
8	chr7:109863600-109864200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:109864600-109865000	Enhancers	Hela-S3	cervix
10	chr7:109864800-109865000	Enhancers	Pancreas	Pancrea
11	chr7:109864800-109865200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:109866000-109866200	Enhancers	Pancreas	Pancrea
13	chr7:109867400-109868200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:109867600-109868000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:109867600-109868200	Enhancers	Dnd41	blood
16	chr7:109867800-109869200	Enhancers	Fetal Lung	lung
17	chr7:109869200-109869600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:109869600-109870800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:109870800-109871200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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