Variant report

Variant	nsv889438
Chromosome Location	chr7:149658257-149838371
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:149822922-149823231	HepG2	liver:	n/a	n/a
2	ATF1	chr7:149700297-149700734	K562	blood:	n/a	n/a
3	ATF1	chr7:149742080-149742094	K562	blood:	n/a	n/a
4	BACH1	chr7:149746378-149746646	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr7:149672891-149673080	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr7:149757655-149757938	GM12878	blood:	n/a	chr7:149757827-149757838
7	BATF	chr7:149743485-149743750	GM12878	blood:	n/a	n/a
8	BCL3	chr7:149808531-149808727	GM12878	blood:	n/a	n/a
9	BCL3	chr7:149808506-149808789	GM12878	blood:	n/a	n/a
10	BCL3	chr7:149836967-149837225	GM12878	blood:	n/a	n/a
11	BHLHE40	chr7:149823075-149823280	HepG2	liver:	n/a	n/a
12	CEBPB	chr7:149804465-149804596	A549	lung:	n/a	n/a
13	CEBPB	chr7:149791162-149791277	HepG2	liver:	n/a	chr7:149791213-149791222 chr7:149791213-149791224
14	CEBPB	chr7:149784693-149784950	HepG2	liver:	n/a	chr7:149784796-149784807
15	CEBPB	chr7:149667593-149667795	HepG2	liver:	n/a	chr7:149667743-149667754
16	CEBPB	chr7:149786176-149786566	IMR90	lung:	n/a	chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786321-149786332 chr7:149786322-149786331
17	CEBPB	chr7:149822945-149823293	HepG2	liver:	n/a	n/a
18	CEBPB	chr7:149786163-149786592	HepG2	liver:	n/a	chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786321-149786332 chr7:149786322-149786331
19	CEBPB	chr7:149791079-149791364	H1-hESC	embryonic stem cell:	n/a	chr7:149791213-149791222 chr7:149791213-149791224
20	CEBPB	chr7:149684039-149684320	K562	blood:	n/a	chr7:149684215-149684232
21	CEBPB	chr7:149822919-149823295	HepG2	liver:	n/a	n/a
22	CEBPB	chr7:149822923-149823294	HepG2	liver:	n/a	n/a
23	CEBPB	chr7:149701434-149701491	K562	blood:	n/a	n/a
24	CEBPB	chr7:149684147-149684317	H1-hESC	embryonic stem cell:	n/a	chr7:149684215-149684232
25	CEBPB	chr7:149786165-149786549	H1-hESC	embryonic stem cell:	n/a	chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786321-149786332 chr7:149786322-149786331
26	CEBPB	chr7:149798171-149798831	Hela-S3	cervix:	n/a	chr7:149798497-149798510 chr7:149798497-149798508
27	CEBPB	chr7:149822980-149823212	HepG2	liver:	n/a	n/a
28	CEBPB	chr7:149701451-149701643	IMR90	lung:	n/a	n/a
29	CEBPB	chr7:149701346-149701464	A549	lung:	n/a	n/a
30	CEBPB	chr7:149684112-149684277	K562	blood:	n/a	chr7:149684215-149684232
31	CEBPB	chr7:149786189-149786644	K562	blood:	n/a	chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786321-149786332 chr7:149786322-149786331
32	CEBPB	chr7:149786250-149786562	A549	lung:	n/a	chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786321-149786332 chr7:149786322-149786331
33	CEBPB	chr7:149667622-149667822	IMR90	lung:	n/a	chr7:149667743-149667754
34	CEBPB	chr7:149786230-149786562	Hela-S3	cervix:	n/a	chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786322-149786331 chr7:149786321-149786332 chr7:149786322-149786331
35	CEBPB	chr7:149713771-149714042	HepG2	liver:	n/a	n/a
36	CEBPB	chr7:149667610-149667796	K562	blood:	n/a	chr7:149667743-149667754
37	CHD1	chr7:149746398-149746684	H1-hESC	embryonic stem cell:	n/a	n/a
38	CHD2	chr7:149798413-149798689	Hela-S3	cervix:	n/a	n/a
39	CHD2	chr7:149746382-149746488	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr7:149746240-149746390	HAc	cerebellar:	n/a	chr7:149746248-149746261
41	CTCF	chr7:149698187-149698850	K562	blood:	n/a	n/a
42	CTCF	chr7:149745900-149746050	HFF-Myc	foreskin:	n/a	n/a
43	CTCF	chr7:149746400-149746550	BJ	skin:	n/a	n/a
44	CTCF	chr7:149807742-149807968	H1-hESC	embryonic stem cell:	n/a	chr7:149807833-149807843 chr7:149807881-149807899 chr7:149807831-149807844 chr7:149807828-149807846 chr7:149807830-149807851 chr7:149807831-149807840 chr7:149807884-149807897
45	CTCF	chr7:149722233-149722425	K562	blood:	n/a	chr7:149722360-149722381 chr7:149722365-149722383
46	CTCF	chr7:149757660-149757810	NB4	blood:	n/a	chr7:149757768-149757784 chr7:149757767-149757785 chr7:149757770-149757783 chr7:149757769-149757790
47	CTCF	chr7:149722346-149722414	NHEK	skin:	n/a	chr7:149722360-149722381 chr7:149722365-149722383
48	CTCF	chr7:149757620-149757770	HA-sp	spinal cord:	n/a	n/a
49	CTCF	chr7:149722265-149722449	Hela-S3	cervix:	n/a	chr7:149722360-149722381 chr7:149722365-149722383
50	CTCF	chr7:149757140-149757290	GM06990	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:149744041-149744091	ECC-1	luminal epithelium:	n/a
2	chr7:149735729-149735779	HAEpiC	amniotic membrane:	n/a
3	chr7:149744041-149744091	ECC-1	luminal epithelium:	n/a
4	chr7:149735729-149735779	HAEpiC	amniotic membrane:	n/a
5	chr7:149746077-149746127	BJ	skin:	n/a
6	chr7:149736127-149736177	T-47D	breast:	n/a
7	chr7:149745299-149745349	BE2_C	brain:	n/a
8	chr7:149731742-149731792	ovcar-3	ovarian:	n/a
9	chr7:149736127-149736177	HAEpiC	amniotic membrane:	n/a
10	chr7:149746640-149746690	SAEC	small airway:	n/a
11	chr7:149746077-149746127	NHDF-neo	bronchial:	n/a
12	chr7:149746077-149746127	HNPCEpiC	eye:	n/a
13	chr7:149742121-149742171	H1-hESC	embryonic stem cell:	embryo
14	chr7:149767502-149767552	HEK293	kidney:	embryo
15	chr7:149744041-149744091	HAEpiC	amniotic membrane:	n/a
16	chr7:149744418-149744468	H1-hESC	embryonic stem cell:	embryo
17	chr7:149744041-149744091	SKMC	muscle:	n/a
18	chr7:149742121-149742171	SK-N-MC	brain:	n/a
19	chr7:149734481-149734531	HepG2	liver:	n/a
20	chr7:149746640-149746690	Jurkat	blood:	n/a
21	chr7:149746077-149746127	Caco-2	colon:	n/a
22	chr7:149744935-149744985	AG04450	lung:	fetal
23	chr7:149736127-149736177	Hepatocyte	liver:	n/a
24	chr7:149736127-149736177	HCPEpiC	choroid plexus:	n/a
25	chr7:149767502-149767552	GM12878	blood:	n/a
26	chr7:149738501-149738551	AG10803	skin:	n/a
27	chr7:149746468-149746518	HRCEpiC	kidney:	n/a
28	chr7:149749941-149749991	NHBE	bronchial:	n/a
29	chr7:149731742-149731792	GM12891	blood:	n/a
30	chr7:149732579-149732629	H1-hESC	embryonic stem cell:	embryo
31	chr7:149731767-149731817	NHDF-neo	bronchial:	n/a
32	chr7:149731742-149731792	HCPEpiC	choroid plexus:	n/a
33	chr7:149738501-149738551	HUVEC	blood vessel:	n/a
34	chr7:149731742-149731792	Caco-2	colon:	n/a
35	chr7:149732847-149732897	HCM	heart:	n/a
36	chr7:149767502-149767552	HCM	heart:	n/a
37	chr7:149731767-149731817	HEK293	kidney:	embryo
38	chr7:149746640-149746690	PrEC	prostate:	n/a
39	chr7:149746640-149746690	A549	lung:	n/a
40	chr7:149780548-149780598	SK-N-MC	brain:	n/a
41	chr7:149732847-149732897	PrEC	prostate:	n/a
42	chr7:149742121-149742171	Caco-2	colon:	n/a
43	chr7:149736127-149736177	GM19239	blood:	n/a
44	chr7:149734481-149734531	HCT-116	colon:	n/a
45	chr7:149738473-149738523	SKMC	muscle:	n/a
46	chr7:149738473-149738523	HL-60	blood:	n/a
47	chr7:149809179-149809229	Jurkat	blood:	n/a
48	chr7:149731767-149731817	AG04450	lung:	fetal
49	chr7:149733821-149733871	GM12891	blood:	n/a
50	chr7:149733103-149733153	ECC-1	luminal epithelium:	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:149699024..149700856-chr7:153788710..153791500,2	K562	blood:
2	chr7:149757556..149758057-chr7:149919306..149919858,2	MCF-7	breast:
3	chr7:149580322..149580844-chr7:149745955..149746566,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF467-4	chr7:149700614-149701513	NONHSAT124086
2	lnc-ATP6V0E2-2	chr7:149759178-149759348	ENSG00000241449
3	lnc-ZNF467-4	chr7:149699986-149700449	NONHSAT124086
4	lnc-ATP6V0E2-1	chr7:149697841-149700167	ENSG00000249583
5	lnc-ATP6V0E2-2	chr7:149773639-149773744	ENSG00000241449
6	lnc-ATP6V0E2-2	chr7:149770706-149770828	ENSG00000241449
7	lnc-ATP6V0E2-2	chr7:149738452-149738550	NONHSAT124091
8	lnc-ATP6V0E2-2	chr7:149741839-149742195	NONHSAT124087
9	lnc-ATP6V0E2-2	chr7:149741839-149742195	NONHSAT124091
10	lnc-ATP6V0E2-2	chr7:149741839-149742195	NONHSAT124088
11	lnc-ATP6V0E2-2	chr7:149735636-149735802	NONHSAT124088
12	lnc-ATP6V0E2-2	chr7:149770706-149770828	ENSG00000241449
13	lnc-ATP6V0E2-2	chr7:149737610-149737743	ENSG00000241449
14	lnc-ATP6V0E2-1	chr7:149701497-149702213	ENSG00000249583
15	lnc-ATP6V0E2-2	chr7:149732185-149732207	NONHSAT124087
16	lnc-ATP6V0E2-2	chr7:149738452-149738550	ENSG00000241449
17	lnc-ATP6V0E2-7	chr7:149676088-149676122	l_3505_chr7:149670979-149676122_ovary
18	lnc-ATP6V0E2-2	chr7:149761675-149761850	ucscGeneNc_uc003whi_1
19	lnc-ATP6V0E2-2	chr7:149775097-149776161	ucscGeneNc_uc003whi_1
20	lnc-ATP6V0E2-2	chr7:149737556-149737743	NONHSAT124091
21	lnc-ATP6V0E2-2	chr7:149770570-149771181	ucscGeneNc_uc003whi_1
22	lnc-ATP6V0E2-2	chr7:149771062-149771465	ENSG00000241449
23	lnc-ATP6V0E2-2	chr7:149774721-149774910	ucscGeneNc_uc003whi_1
24	lnc-ATP6V0E2-8	chr7:149697081-149697368	expReg_chr7_12098_+
25	lnc-ATP6V0E2-7	chr7:149670980-149671663	l_3505_chr7:149670979-149676122_ovary
26	lnc-ATP6V0E2-2	chr7:149771062-149771172	ENSG00000241449

Variant related genes	Relation type
ENSG00000241449	TF binding region
ENSG00000260555	TF binding region
ENSG00000241449	CpG island
ENSG00000260555	CpG island
JPH1	miRNA target sites
SOCS2	miRNA target sites

Extended variants
information (count: 5621 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:5621 , 50 per page) page: 1 2 3 4 5 6 7 ... 113

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3102320	chr7:149658257-149658258	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs200782886	chr7:149658405-149658406	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs12667003	chr7:149658512-149658513	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs140811682	chr7:149658520-149658521	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs562929575	chr7:149658521-149658522	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs532076440	chr7:149658536-149658537	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs548549983	chr7:149658568-149658569	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs12673560	chr7:149658571-149658572	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs561732352	chr7:149658586-149658587	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs527259441	chr7:149658644-149658645	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs1994185	chr7:149658649-149658650	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs4565379	chr7:149658684-149658685	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs36119679	chr7:149658706-149658707	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs144439176	chr7:149658795-149658796	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs186589856	chr7:149658816-149658817	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs35065312	chr7:149658821-149658822	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs34288448	chr7:149658839-149658840	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs550040939	chr7:149658897-149658898	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs148906052	chr7:149658913-149658914	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs372955075	chr7:149658915-149658916	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs2373616	chr7:149658974-149658975	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs11980240	chr7:149658999-149659000	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs191476299	chr7:149659015-149659016	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs533959459	chr7:149659020-149659021	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs140894819	chr7:149659037-149659038	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs576964033	chr7:149659079-149659080	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs35269292	chr7:149659097-149659098	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs563098060	chr7:149659098-149659099	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs35275640	chr7:149659099-149659100	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs183955103	chr7:149659160-149659161	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs542527213	chr7:149659175-149659176	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs113318578	chr7:149659191-149659192	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs3102319	chr7:149659223-149659224	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs562218595	chr7:149659251-149659252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs142107719	chr7:149659277-149659278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527971094	chr7:149659363-149659364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs541065549	chr7:149659374-149659375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs564062211	chr7:149659376-149659377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs533108292	chr7:149659378-149659379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549857186	chr7:149659383-149659384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs111911437	chr7:149659386-149659387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs539222765	chr7:149659390-149659391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs569842816	chr7:149659392-149659393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs529049064	chr7:149659395-149659396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs554015612	chr7:149659458-149659459	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs549139252	chr7:149659472-149659473	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs115526636	chr7:149659520-149659521	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs28567444	chr7:149659521-149659522	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs542631519	chr7:149659524-149659525	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs138300454	chr7:149659540-149659541	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD

Chromatin state (count:623 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149657000-149660200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:149658000-149658600	Enhancers	Dnd41	blood
3	chr7:149658600-149659200	ZNF genes & repeats	Dnd41	blood
4	chr7:149659400-149660200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:149659600-149660400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr7:149659600-149660400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr7:149659600-149660400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr7:149660000-149660400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:149660000-149660400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:149660000-149660800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:149660200-149660400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:149660200-149660400	Enhancers	Stomach Mucosa	stomach
13	chr7:149660200-149660600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:149660200-149660800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr7:149660800-149663400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:149660800-149666200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:149663400-149663800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:149663400-149664600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr7:149663800-149672000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:149666200-149666400	Enhancers	Brain Hippocampus Middle	brain
21	chr7:149666200-149666600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:149666200-149669800	Weak transcription	Pancreas	Pancrea
23	chr7:149666400-149668400	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:149666600-149671400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:149668400-149669000	Enhancers	Brain Hippocampus Middle	brain
26	chr7:149669800-149670400	Enhancers	Pancreas	Pancrea
27	chr7:149670000-149670400	Enhancers	Fetal Intestine Large	intestine
28	chr7:149670000-149670800	Enhancers	Duodenum Mucosa	Duodenum
29	chr7:149670800-149672200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:149671400-149672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:149671600-149671800	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:149671600-149672200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr7:149671600-149672400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:149672000-149672400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr7:149672000-149672400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr7:149672000-149673000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr7:149672200-149672400	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr7:149672200-149672400	Enhancers	Duodenum Mucosa	Duodenum
39	chr7:149672200-149672800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:149672200-149673200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr7:149672200-149673200	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr7:149672200-149673200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:149672400-149672800	Active TSS	H1 Cell Line	embryonic stem cell
44	chr7:149672400-149672800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr7:149672400-149673200	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr7:149672400-149673200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr7:149672400-149673200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:149672600-149673000	Active TSS	Primary hematopoietic stem cells	blood
49	chr7:149672800-149673200	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr7:149672800-149673200	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links