Variant report

Variant	nsv889954
Chromosome Location	chr8:4305620-4321106
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 790 )
Associated
traits (count: 126 )

Variant overlapped rSNPs/rCNVs (count:790 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553109936	chr8:4307003-4307004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs186353228	chr8:4307005-4307006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs115418474	chr8:4307008-4307009	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs151158309	chr8:4307010-4307011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs569049600	chr8:4307040-4307041	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs75854779	chr8:4307048-4307049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs189244036	chr8:4307053-4307054	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs566878518	chr8:4307055-4307056	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs180780312	chr8:4307063-4307064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs553243258	chr8:4307070-4307071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs541851446	chr8:4307073-4307074	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs368966352	chr8:4307098-4307099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs111770769	chr8:4307107-4307108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs557185860	chr8:4307111-4307112	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs1235012	chr8:4307116-4307117	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs141273193	chr8:4307139-4307140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs185874379	chr8:4307142-4307143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs77579184	chr8:4307146-4307147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539794449	chr8:4307153-4307154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs565282224	chr8:4307157-4307158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs146763090	chr8:4307166-4307167	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs147938316	chr8:4307171-4307172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs562719366	chr8:4307172-4307173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs530204425	chr8:4307173-4307174	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs548679982	chr8:4307180-4307181	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs566813011	chr8:4307187-4307188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs564004393	chr8:4307188-4307189	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs141845023	chr8:4307193-4307194	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs1154070	chr8:4307197-4307198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs571612563	chr8:4307199-4307200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs191177987	chr8:4307203-4307204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs369380139	chr8:4307210-4307211	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs73660849	chr8:4307213-4307214	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs536017375	chr8:4307219-4307220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs73660850	chr8:4307223-4307224	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs59114158	chr8:4307224-4307225	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs373235970	chr8:4307226-4307227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs558113796	chr8:4307227-4307228	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs566634398	chr8:4307236-4307237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs58489119	chr8:4307243-4307244	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs377482499	chr8:4307250-4307251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs377638535	chr8:4307251-4307252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs562806731	chr8:4307264-4307265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs58938268	chr8:4307268-4307269	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs568330619	chr8:4307280-4307281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs183339952	chr8:4307285-4307286	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs560683770	chr8:4307302-4307303	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs1006882	chr8:4307310-4307311	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs186279500	chr8:4307322-4307323	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs59245178	chr8:4307332-4307333	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:126)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21829676	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Prostate cancer	17217626	CNVD
Developmental delay	19128483	CNVD
Neuroticism	17667963	CNVD
Leukoplakia	24403051	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	22014273	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Chronic myeloid leukemia	21384125	CNVD
Tetralogy of Fallot	22912587	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4307000-4307600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr8:4307200-4307600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:4309200-4310400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:4310400-4312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:4310800-4311200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:4312400-4313000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:4315400-4316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:4316400-4317000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:4318400-4319000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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