Variant report

Variant	nsv890921
Chromosome Location	chr8:54991447-55043802
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:721)
CpG islands
(count:1038)
Chromatin interactive
region (count:54)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:721 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr8:55006625-55006885	K562	blood:	n/a	n/a
2	ARID3A	chr8:55012881-55013984	K562	blood:	n/a	n/a
3	ARID3A	chr8:55018717-55019091	K562	blood:	n/a	n/a
4	ARID3A	chr8:55014700-55014793	K562	blood:	n/a	n/a
5	ARID3A	chr8:55012852-55014180	HepG2	liver:	n/a	n/a
6	ARID3A	chr8:55014439-55014825	HepG2	liver:	n/a	n/a
7	ATF1	chr8:55018643-55019258	K562	blood:	n/a	n/a
8	ATF2	chr8:55014498-55014923	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF3	chr8:55014571-55014784	K562	blood:	n/a	n/a
10	BACH1	chr8:55013899-55014674	H1-hESC	embryonic stem cell:	n/a	n/a
11	BCLAF1	chr8:55014129-55014597	GM12878	blood:	n/a	chr8:55014572-55014581
12	BHLHE40	chr8:55013215-55015126	K562	blood:	n/a	chr8:55014627-55014643 chr8:55014526-55014542
13	BHLHE40	chr8:55014229-55014895	GM12878	blood:	n/a	chr8:55014627-55014643 chr8:55014526-55014542
14	BHLHE40	chr8:55013765-55013986	GM12878	blood:	n/a	n/a
15	BHLHE40	chr8:55018810-55019419	K562	blood:	n/a	n/a
16	BHLHE40	chr8:55012805-55012905	K562	blood:	n/a	n/a
17	BHLHE40	chr8:55014303-55014813	HepG2	liver:	n/a	chr8:55014627-55014643 chr8:55014526-55014542
18	BRCA1	chr8:55014673-55014700	HepG2	liver:	n/a	n/a
19	BRCA1	chr8:55014723-55014734	GM12878	blood:	n/a	n/a
20	CBX3	chr8:55002517-55002905	K562	blood:	n/a	n/a
21	CBX3	chr8:54999180-54999711	K562	blood:	n/a	n/a
22	CBX3	chr8:54999398-54999689	K562	blood:	n/a	n/a
23	CBX3	chr8:55014325-55015500	K562	blood:	n/a	n/a
24	CCNT2	chr8:55013643-55014772	K562	blood:	n/a	n/a
25	CCNT2	chr8:55012910-55013110	K562	blood:	n/a	n/a
26	CEBPB	chr8:55013118-55014920	Hela-S3	cervix:	n/a	chr8:55014622-55014630
27	CEBPB	chr8:55014550-55014855	A549	lung:	n/a	chr8:55014622-55014630
28	CEBPB	chr8:55027515-55027866	A549	lung:	n/a	chr8:55027732-55027743 chr8:55027679-55027690
29	CEBPB	chr8:55014250-55014853	IMR90	lung:	n/a	chr8:55014622-55014630
30	CEBPB	chr8:55002050-55002410	HepG2	liver:	n/a	n/a
31	CEBPB	chr8:55014507-55014781	HepG2	liver:	n/a	chr8:55014622-55014630
32	CEBPB	chr8:55010706-55011064	IMR90	lung:	n/a	n/a
33	CEBPB	chr8:55002072-55002399	MCF-7	breast:	n/a	n/a
34	CEBPB	chr8:55014474-55014861	K562	blood:	n/a	chr8:55014622-55014630
35	CEBPB	chr8:55002072-55002366	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr8:55027619-55027791	H1-hESC	embryonic stem cell:	n/a	chr8:55027732-55027743 chr8:55027679-55027690
37	CEBPB	chr8:55014470-55014865	K562	blood:	n/a	chr8:55014622-55014630
38	CEBPB	chr8:55011746-55011946	HepG2	liver:	n/a	chr8:55011916-55011927
39	CEBPB	chr8:55027560-55027842	IMR90	lung:	n/a	chr8:55027732-55027743 chr8:55027679-55027690
40	CEBPB	chr8:55010713-55011013	K562	blood:	n/a	n/a
41	CEBPB	chr8:55011752-55011825	K562	blood:	n/a	n/a
42	CEBPB	chr8:55002036-55002415	K562	blood:	n/a	n/a
43	CEBPB	chr8:55002053-55002401	A549	lung:	n/a	n/a
44	CEBPB	chr8:55013426-55013795	IMR90	lung:	n/a	n/a
45	CEBPB	chr8:55014564-55014742	K562	blood:	n/a	chr8:55014622-55014630
46	CEBPB	chr8:55014497-55014838	H1-hESC	embryonic stem cell:	n/a	chr8:55014622-55014630
47	CEBPB	chr8:55013410-55013849	K562	blood:	n/a	n/a
48	CEBPB	chr8:55001978-55002444	A549	lung:	n/a	n/a
49	CEBPB	chr8:55014488-55014912	MCF-7	breast:	n/a	chr8:55014622-55014630
50	CEBPB	chr8:55014377-55014967	A549	lung:	n/a	chr8:55014622-55014630

(count:1038 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:55014388-55014438	NT2-D1	testis:	n/a
2	chr8:55014388-55014438	NT2-D1	testis:	n/a
3	chr8:55014772-55014822	AG10803	skin:	n/a
4	chr8:55012178-55012228	H1-hESC	embryonic stem cell:	embryo
5	chr8:55014641-55014691	HMEC	breast:	n/a
6	chr8:55014641-55014691	HAEpiC	amniotic membrane:	n/a
7	chr8:55014772-55014822	GM12878	blood:	n/a
8	chr8:55014643-55014693	GM06990	blood:	n/a
9	chr8:55014377-55014427	AG04449	skin:	fetal
10	chr8:55016751-55016801	NHBE	bronchial:	n/a
11	chr8:55016879-55016929	NB4	blood:	n/a
12	chr8:55016879-55016929	ECC-1	luminal epithelium:	n/a
13	chr8:54997999-54998049	NHDF-neo	bronchial:	n/a
14	chr8:55014388-55014438	SK-N-MC	brain:	n/a
15	chr8:55011819-55011869	AG04450	lung:	fetal
16	chr8:54997999-54998049	PrEC	prostate:	n/a
17	chr8:55014671-55014721	AG04450	lung:	fetal
18	chr8:55014671-55014721	SK-N-MC	brain:	n/a
19	chr8:55014643-55014693	A549	lung:	n/a
20	chr8:55014888-55014938	Caco-2	colon:	n/a
21	chr8:55014888-55014938	T-47D	breast:	n/a
22	chr8:55016751-55016801	AoSMC	blood vessel:	n/a
23	chr8:55014847-55014897	AG10803	skin:	n/a
24	chr8:55014888-55014938	AG09319	gingival:	n/a
25	chr8:55016751-55016801	HCT-116	colon:	n/a
26	chr8:55037773-55037823	HRPEpiC	eye:	n/a
27	chr8:55016751-55016801	CMK	blood:	n/a
28	chr8:55016930-55016980	Hela-S3	cervix:	n/a
29	chr8:54997999-54998049	GM19239	blood:	n/a
30	chr8:55014040-55014090	GM12891	blood:	n/a
31	chr8:55014377-55014427	HRCEpiC	kidney:	n/a
32	chr8:55014643-55014693	NB4	blood:	n/a
33	chr8:55014643-55014693	PFSK-1	brain:	n/a
34	chr8:55014655-55014705	A549	lung:	n/a
35	chr8:55014888-55014938	AG09309	skin:	n/a
36	chr8:55014641-55014691	ProgFib	skin:	n/a
37	chr8:55014641-55014691	SK-N-SH_RA	brain:	n/a
38	chr8:55014772-55014822	PANC-1	pancreas:	n/a
39	chr8:55016930-55016980	HCF	heart:	n/a
40	chr8:54997999-54998049	AG09309	skin:	n/a
41	chr8:54997999-54998049	NB4	blood:	n/a
42	chr8:55014655-55014705	ProgFib	skin:	n/a
43	chr8:55014643-55014693	HAEpiC	amniotic membrane:	n/a
44	chr8:55037773-55037823	LNCaP	prostate:	n/a
45	chr8:54997999-54998049	Jurkat	blood:	n/a
46	chr8:55014772-55014822	GM12892	blood:	n/a
47	chr8:54997999-54998049	PFSK-1	brain:	n/a
48	chr8:55014888-55014938	ECC-1	luminal epithelium:	n/a
49	chr8:55014671-55014721	H1-hESC	embryonic stem cell:	embryo
50	chr8:54997999-54998049	HRCEpiC	kidney:	n/a

(count:54 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr8:9412503..9413441-chr8:55013581..55014482,2	Hela-S3	cervix:
2	chr8:54791937..54794536-chr8:55012642..55014305,2	K562	blood:
3	chr8:55011828..55014733-chr8:55017986..55020090,2	K562	blood:
4	chr8:55013205..55015046-chr8:55046385..55049225,2	MCF-7	breast:
5	chr8:55037044..55042140-chr8:55046805..55049564,4	MCF-7	breast:
6	chr8:55011828..55016126-chr8:55017682..55020090,4	K562	blood:
7	chr8:55010890..55013599-chr8:55056433..55059069,2	MCF-7	breast:
8	chr8:54990352..54992315-chr8:55004670..55007174,2	K562	blood:
9	chr8:55012818..55014822-chr8:55028149..55031655,3	MCF-7	breast:
10	chr8:54931365..54936825-chr8:55013053..55016452,9	MCF-7	breast:
11	chr8:54990352..54992315-chr8:55004670..55007174,2	K562	blood:
12	chr8:54990580..54993539-chr8:55009667..55012320,2	K562	blood:
13	chr1:43147767..43148594-chr8:55013821..55014667,2	HCT-116	colon:
14	chr8:54996188..54999075-chr8:55012427..55015650,3	K562	blood:
15	chr8:54924177..54926194-chr8:55016876..55019206,2	K562	blood:
16	chr8:55022281..55024042-chr8:55030500..55032091,2	K562	blood:
17	chr8:54990580..54994755-chr8:55009285..55012320,3	K562	blood:
18	chr8:55005836..55007387-chr8:55012760..55014510,2	MCF-7	breast:
19	chr8:55009975..55010673-chr8:55078381..55079050,2	MCF-7	breast:
20	chr8:55007468..55010231-chr8:55019347..55021686,2	K562	blood:
21	chr8:55005117..55006971-chr8:55012903..55014492,2	K562	blood:
22	chr8:54992135..54993902-chr8:55013226..55015593,2	K562	blood:
23	chr8:54990408..54992108-chr8:55013448..55015139,2	MCF-7	breast:
24	chr8:55006677..55009466-chr8:55047209..55049239,2	MCF-7	breast:
25	chr8:55008979..55011480-chr8:55012604..55016082,4	K562	blood:
26	chr8:55012036..55017270-chr8:55017780..55022488,6	MCF-7	breast:
27	chr8:54990580..54993539-chr8:55009667..55012320,2	K562	blood:
28	chr8:55003709..55008030-chr8:55008912..55012851,6	K562	blood:
29	chr8:55003709..55008030-chr8:55008912..55012851,6	K562	blood:
30	chr8:55008237..55011334-chr8:55014384..55018005,3	MCF-7	breast:
31	chr8:55021464..55024057-chr8:55046548..55048568,2	MCF-7	breast:
32	chr8:55012350..55016130-chr8:55063151..55067016,6	K562	blood:
33	chr8:55039661..55044382-chr8:55045790..55048984,5	K562	blood:
34	chr20:45946400..45948172-chr8:55014333..55016301,2	MCF-7	breast:
35	chr5:162886981..162887825-chr8:55014104..55014735,2	NB4	blood:
36	chr8:55013237..55015721-chr8:55016855..55019742,2	MCF-7	breast:
37	chr8:54934501..54937318-chr8:55011753..55013857,2	K562	blood:
38	chr8:55014583..55016959-chr8:55047205..55048947,2	K562	blood:
39	chr8:54990580..54994755-chr8:55009285..55012320,3	K562	blood:
40	chr8:55012569..55016203-chr8:55046168..55049938,7	MCF-7	breast:
41	chr8:55012759..55014929-chr8:55046340..55050101,4	K562	blood:
42	chr8:55042895..55045520-chr8:55046912..55048671,2	MCF-7	breast:
43	chr8:55011657..55013589-chr8:55059186..55062088,2	K562	blood:
44	chr8:55003346..55005748-chr8:55012113..55014512,3	MCF-7	breast:
45	chr8:55017880..55020655-chr8:55046123..55048427,3	MCF-7	breast:
46	chr8:54791520..54793289-chr8:55017925..55020342,2	K562	blood:
47	chr8:55040333..55042140-chr8:55044755..55047552,2	K562	blood:
48	chr8:55012232..55015363-chr8:55063151..55067460,5	K562	blood:
49	chr8:54934843..54936668-chr8:55008922..55011513,2	K562	blood:
50	chr8:55007468..55010231-chr8:55019347..55021686,2	K562	blood:

No data

Variant related genes	Relation type
LYPLA1	TF binding region
MRPL15	TF binding region
LYPLA1	CpG island
MRPL15	CpG island
ENSG00000147509	chromatin interactions
ENSG00000267882	chromatin interactions
ENSG00000251835	chromatin interactions
ENSG00000120992	chromatin interactions
ENSG00000170584	chromatin interactions
ENSG00000187735	chromatin interactions
ENSG00000072571	chromatin interactions
ENSG00000101040	chromatin interactions
ENSG00000065978	chromatin interactions
ENSG00000173273	chromatin interactions
ENSG00000137547	chromatin interactions

Extended variants
information (count: 1644 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:1644 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs367674248	chr8:54991447-54991448	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs528337526	chr8:54991466-54991467	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs551611845	chr8:54991521-54991522	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs571723444	chr8:54991530-54991531	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs537564461	chr8:54991554-54991555	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs550960159	chr8:54991578-54991579	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs567587992	chr8:54991580-54991581	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs543403514	chr8:54991599-54991600	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs536929506	chr8:54991623-54991624	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs185881141	chr8:54991671-54991672	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs573375008	chr8:54991680-54991681	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs538805958	chr8:54991684-54991685	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs76178483	chr8:54991704-54991705	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs374940991	chr8:54991712-54991713	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs147782661	chr8:54991748-54991749	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs543126191	chr8:54991757-54991758	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs189121678	chr8:54991830-54991831	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs375497170	chr8:54991831-54991832	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs578123747	chr8:54991835-54991836	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs573604273	chr8:54991851-54991852	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs542747662	chr8:54991863-54991864	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs181170563	chr8:54991865-54991866	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs368572918	chr8:54991884-54991885	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs58948369	chr8:54991890-54991891	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs75520745	chr8:54991896-54991897	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs551575009	chr8:54991906-54991907	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs185611485	chr8:54991915-54991916	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs371618097	chr8:54991917-54991918	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs531009905	chr8:54991926-54991927	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs375035666	chr8:54992000-54992001	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs370501269	chr8:54992017-54992018	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs567646846	chr8:54992088-54992089	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs536288490	chr8:54992129-54992130	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs546981268	chr8:54992137-54992138	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs549437571	chr8:54992193-54992194	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs7011379	chr8:54992301-54992302	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs190703597	chr8:54992302-54992303	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs558690845	chr8:54992303-54992304	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs575464101	chr8:54992321-54992322	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs182945582	chr8:54992328-54992329	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs187060539	chr8:54992339-54992340	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs569962405	chr8:54992360-54992361	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs527913469	chr8:54992452-54992453	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs192342314	chr8:54992487-54992488	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs559323220	chr8:54992501-54992502	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs573140699	chr8:54992548-54992549	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs369268636	chr8:54992559-54992560	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs111381248	chr8:54992610-54992611	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs565051755	chr8:54992622-54992623	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs184077129	chr8:54992650-54992651	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Sezary syndrome	18413736	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Uveal melanoma	20484589	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Adenocarcinoma	20824076	CNVD

Chromatin state (count:1320 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54946400-54999200	Weak transcription	NHDF-Ad	bronchial
2	chr8:54949800-54999400	Weak transcription	NHLF	lung
3	chr8:54956000-54999000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:54957200-54991600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:54957600-55009800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:54960000-54993000	Weak transcription	Brain Substantia Nigra	brain
7	chr8:54963200-54999200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr8:54963200-54999200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:54963200-54999200	Weak transcription	Colonic Mucosa	Colon
10	chr8:54963200-54999200	Weak transcription	Small Intestine	intestine
11	chr8:54963400-54999200	Weak transcription	HSMMtube	muscle
12	chr8:54963800-54999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr8:54966200-54997600	Weak transcription	Pancreas	Pancrea
14	chr8:54966400-54991800	Weak transcription	NH-A	brain
15	chr8:54966400-55007600	Weak transcription	Psoas Muscle	Psoas
16	chr8:54966400-55012800	Weak transcription	Fetal Kidney	kidney
17	chr8:54966600-54991800	Weak transcription	Osteobl	bone
18	chr8:54966600-55012800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:54967200-54991600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:54967200-54999200	Weak transcription	Ovary	ovary
21	chr8:54974400-54999200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:54974600-54991600	Weak transcription	Thymus	Thymus
23	chr8:54974600-54997400	Weak transcription	Spleen	Spleen
24	chr8:54974600-54999200	Weak transcription	Right Ventricle	heart
25	chr8:54974800-54991600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:54974800-54991600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:54974800-54999200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:54974800-55002200	Weak transcription	Gastric	stomach
29	chr8:54975600-55012800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr8:54975800-54999200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr8:54975800-54999600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:54977200-54991600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:54977400-54991600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr8:54977800-54991800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr8:54978400-54991800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr8:54982600-54999400	Weak transcription	HSMM	muscle
37	chr8:54983600-54991600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:54983800-54999200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:54984000-55005800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr8:54984800-54991600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:54985000-54999200	Weak transcription	Fetal Brain Female	brain
42	chr8:54986000-54991600	Weak transcription	Fetal Stomach	stomach
43	chr8:54986000-54991600	Weak transcription	Lung	lung
44	chr8:54986000-54991600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr8:54986000-54997600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:54986000-54999200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr8:54986200-54991600	Weak transcription	Brain Germinal Matrix	brain
48	chr8:54986200-54992000	Weak transcription	NHEK	skin
49	chr8:54986200-55000000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr8:54986600-54991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links