Variant report

Variant	nsv890969
Chromosome Location	chr8:64807144-65047353
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:64810767..64812883-chr8:64815060..64817336,2	K562	blood:
2	chr8:64891782..64893971-chr8:64898335..64899954,2	K562	blood:
3	chr8:64810767..64812883-chr8:64815060..64817336,2	K562	blood:
4	chr8:64982200..64985082-chr8:64993821..64995361,2	MCF-7	breast:
5	chr8:64891782..64893971-chr8:64898335..64899954,2	K562	blood:
6	chr8:64982766..64985265-chr8:64985566..64987606,2	MCF-7	breast:
7	chr8:64876181..64877862-chr8:65648410..65650840,2	K562	blood:
8	chr8:64982200..64985082-chr8:64993821..64995361,2	MCF-7	breast:
9	chr8:64982766..64985265-chr8:64985566..64987606,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-32K4.2.1-5	chr8:64853560-64856033	ucscGeneNc_uc003xvc_2
2	lnc-RP11-32K4.2.1-5	chr8:64859791-64860606	ucscGeneNc_uc003xvc_2
3	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1
4	lnc-RP11-32K4.2.1-5	chr8:64844542-64844957	ucscGeneNc_uc003xvc_2
5	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1
6	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1
7	lnc-CYP7B1-6	chr8:64808055-64808106	ENSG00000253554.1

No data

Extended variants
information (count: 4291 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:4291 , 50 per page) page: 1 2 3 4 5 6 7 ... 86

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377729854	chr8:64807621-64807622	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs183902452	chr8:64807645-64807646	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs569252065	chr8:64807707-64807708	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs188749142	chr8:64807735-64807736	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs12549772	chr8:64807753-64807754	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs573074564	chr8:64807766-64807767	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs372665678	chr8:64807855-64807856	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs555401776	chr8:64807864-64807865	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs35382847	chr8:64807917-64807918	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs573559763	chr8:64807946-64807947	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs113095397	chr8:64807956-64807957	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs544234973	chr8:64807986-64807987	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs562451452	chr8:64808054-64808055	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs533293332	chr8:64808075-64808076	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs141714662	chr8:64808080-64808081	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs558924817	chr8:64808103-64808104	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs530224584	chr8:64808112-64808113	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs373909710	chr8:64808121-64808122	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs560402762	chr8:64808125-64808126	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs61157046	chr8:64808191-64808192	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs546779801	chr8:64808223-64808224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs574548157	chr8:64808354-64808355	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs373739512	chr8:64808369-64808370	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs568584684	chr8:64808384-64808385	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs569115987	chr8:64808433-64808434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs62509550	chr8:64808455-64808456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs529361341	chr8:64808516-64808517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs550597721	chr8:64808563-64808564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs568892596	chr8:64808583-64808584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77033091	chr8:64808585-64808586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs193302836	chr8:64808593-64808594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs560085108	chr8:64808618-64808619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs532553447	chr8:64808635-64808636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs555680650	chr8:64808637-64808638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs573713158	chr8:64808651-64808652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs543949566	chr8:64808656-64808657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs552322385	chr8:64808657-64808658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs577676861	chr8:64808669-64808670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs115538571	chr8:64808689-64808690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs560439523	chr8:64808754-64808755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs531553389	chr8:64808839-64808840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs572246230	chr8:64808900-64808901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs542850477	chr8:64808910-64808911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs560911565	chr8:64808978-64808979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548364739	chr8:64808982-64808983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs529420021	chr8:64808999-64809000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs142768788	chr8:64809000-64809001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs374548511	chr8:64809031-64809032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs575352504	chr8:64809032-64809033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs200705370	chr8:64809059-64809060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:218 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64807600-64808400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:64807800-64808200	Enhancers	Adipose Nuclei	Adipose
3	chr8:64808400-64815600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:64813000-64813600	Enhancers	Brain Germinal Matrix	brain
5	chr8:64815600-64816400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:64815800-64816200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:64816000-64816400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:64824000-64832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:64832000-64832200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:64843000-64843400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:64849800-64850000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:64850000-64851000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:64850600-64851400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:64850600-64851400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:64851000-64851400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:64851000-64852000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:64851000-64852000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:64873600-64874600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:64873800-64874800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr8:64874000-64874400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr8:64874000-64874600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:64874000-64874800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr8:64874200-64874800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr8:64874200-64874800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:64874400-64875000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr8:64874600-64879200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:64874600-64883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr8:64874800-64884000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr8:64876400-64876800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:64876800-64877000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr8:64877200-64877400	Enhancers	Brain Angular Gyrus	brain
32	chr8:64877600-64879200	Weak transcription	Brain Angular Gyrus	brain
33	chr8:64878400-64879200	Enhancers	Fetal Brain Male	brain
34	chr8:64878400-64879600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr8:64878800-64879400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:64879000-64879200	Enhancers	Brain Anterior Caudate	brain
37	chr8:64879000-64879600	Enhancers	Aorta	Aorta
38	chr8:64879000-64879600	Enhancers	Brain Hippocampus Middle	brain
39	chr8:64879000-64879600	Flanking Active TSS	Brain Substantia Nigra	brain
40	chr8:64879000-64879600	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr8:64879000-64879800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr8:64879000-64879800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr8:64879000-64879800	Enhancers	Brain Cingulate Gyrus	brain
44	chr8:64879200-64879600	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr8:64879200-64879600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr8:64879200-64879600	Enhancers	Lung	lung
47	chr8:64879200-64879600	Enhancers	Rectal Smooth Muscle	rectum
48	chr8:64879200-64879600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr8:64879200-64879800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:64879200-64879800	Enhancers	Brain Angular Gyrus	brain

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