Variant report

Variant	nsv890970
Chromosome Location	chr8:64975466-65125295
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:65121358..65123984-chr8:65128022..65129951,3	K562	blood:
2	chr8:64982200..64985082-chr8:64993821..64995361,2	MCF-7	breast:
3	chr8:65061835..65063681-chr8:65066858..65068581,2	MCF-7	breast:
4	chr8:64982766..64985265-chr8:64985566..64987606,2	MCF-7	breast:
5	chr8:64982766..64985265-chr8:64985566..64987606,2	MCF-7	breast:
6	chr8:65103952..65105975-chr8:65106420..65108352,2	MCF-7	breast:
7	chr8:65103952..65105975-chr8:65106420..65108352,2	MCF-7	breast:
8	chr8:64982200..64985082-chr8:64993821..64995361,2	MCF-7	breast:
9	chr8:65061835..65063681-chr8:65066858..65068581,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-32K4.2.1-4	chr8:65095917-65096061	NONHSAT126954
2	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1
3	lnc-CYP7B1-6	chr8:65063650-65063721	ENSG00000253554.1
4	lnc-CYP7B1-6	chr8:65063650-65063721	ENSG00000253554.1
5	lnc-CYP7B1-6	chr8:65079532-65079584	ENSG00000253554.1
6	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1
7	lnc-RP11-32K4.2.1-4	chr8:65095220-65095368	NONHSAT126954
8	lnc-CYP7B1-6	chr8:65046005-65046071	ENSG00000253554.1

No data

Extended variants
information (count: 4775 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:4775 , 50 per page) page: 1 2 3 4 5 6 7 ... 96

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4103372	chr8:64982208-64982209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs113199371	chr8:64982220-64982221	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs558781068	chr8:64982233-64982234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs564193593	chr8:64982234-64982235	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs577035926	chr8:64982244-64982245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs541195383	chr8:64982245-64982246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs574500016	chr8:64982268-64982269	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs541542600	chr8:64982284-64982285	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150462954	chr8:64982374-64982375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs138202625	chr8:64982417-64982418	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs191306712	chr8:64982422-64982423	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs143894670	chr8:64982437-64982438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs573916635	chr8:64982472-64982473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs183061338	chr8:64982477-64982478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs533081665	chr8:64982518-64982519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs549694084	chr8:64982524-64982525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs568146313	chr8:64982574-64982575	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs530255497	chr8:64982582-64982583	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs78912797	chr8:64982644-64982645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs117983589	chr8:64982662-64982663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs146591659	chr8:64982690-64982691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75207440	chr8:64982695-64982696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs188398471	chr8:64982785-64982786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs570784840	chr8:64982804-64982805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs190694072	chr8:64982814-64982815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7017705	chr8:64982843-64982844	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs113843996	chr8:64982849-64982850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs183010961	chr8:64982861-64982862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534282517	chr8:64982863-64982864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11991089	chr8:64982873-64982874	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs1601423	chr8:64982964-64982965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575203839	chr8:64982991-64982992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs34607946	chr8:64983079-64983080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571130086	chr8:64983083-64983084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544364476	chr8:64983090-64983091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs76568592	chr8:64983101-64983102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528430743	chr8:64983105-64983106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs540525281	chr8:64983138-64983139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs561966933	chr8:64983186-64983187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529033692	chr8:64983238-64983239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs548674090	chr8:64983256-64983257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs117860220	chr8:64983348-64983349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75877871	chr8:64983371-64983372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs552179692	chr8:64983379-64983380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570494547	chr8:64983425-64983426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs187568622	chr8:64983475-64983476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs553385728	chr8:64983538-64983539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs367647360	chr8:64983588-64983589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs568641203	chr8:64983591-64983592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192512296	chr8:64983627-64983628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:153 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64982200-64982400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:64982200-64982600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:64982600-64992000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:64983800-64984800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:64984600-64985200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:64988800-64989000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:64989000-64990200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:64989200-64989400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:64990200-64990400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:64990200-64992000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:64990600-64991600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:64990600-64992000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:64990600-64992600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:64991600-64993400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:64992000-64992200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:64992000-64992200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:64992000-64992200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr8:64992000-64992400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:64992000-64992400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:64992000-64993000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr8:64992000-64993000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr8:64992000-64993000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:64992000-64993200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr8:64992000-64993200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr8:64992000-64993400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr8:64992200-64992400	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr8:64992200-64992600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr8:64992200-64992800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:64992200-64992800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:64992400-64992600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:64992400-64992600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr8:64992400-64992600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr8:64992600-64992800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr8:64992600-64993000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:64992600-64993000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr8:64992600-64993000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:64992600-64993200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:64992800-64993000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr8:64992800-64993000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:64993000-64994200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:64993000-64996000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr8:64993000-64996000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:64993000-65004800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr8:64993200-64994400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:64993400-64995800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:64994800-64995000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:64995800-64996800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:64995800-64996800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
49	chr8:64996000-64996400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
50	chr8:64996000-64996600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links