Variant report

Variant	nsv891051
Chromosome Location	chr8:78376314-78477561
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:18)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFHX4-3	chr8:78436701-78436793	NONHSAT127353
2	lnc-ZFHX4-3	chr8:78418018-78418245	ENSG00000254366.2
3	lnc-ZFHX4-3	chr8:78436701-78436793	ENSG00000254366.2
4	lnc-ZFHX4-3	chr8:78427531-78427586	NONHSAT127353
5	lnc-ZFHX4-3	chr8:78436701-78436793	ENSG00000254366
6	lnc-ZFHX4-3	chr8:78420742-78420833	ENSG00000254366
7	lnc-ZFHX4-3	chr8:78388519-78388737	NONHSAT127353
8	lnc-ZFHX4-3	chr8:78449461-78449526	ENSG00000254366.2
9	lnc-ZFHX4-3	chr8:78427531-78427586	ENSG00000254366.2
10	lnc-ZFHX4-3	chr8:78418018-78418245	NONHSAT127353
11	lnc-ZFHX4-3	chr8:78449461-78449526	NONHSAT127353
12	lnc-ZFHX4-3	chr8:78420742-78420833	ENSG00000254366.2
13	lnc-ZFHX4-3	chr8:78420742-78420833	NONHSAT127353
14	lnc-ZFHX4-3	chr8:78418018-78418245	ENSG00000254366
15	lnc-ZFHX4-3	chr8:78427531-78427586	ENSG00000254366
16	lnc-ZFHX4-3	chr8:78388520-78388737	XLOC_006853
17	lnc-ZFHX4-3	chr8:78449461-78449526	ENSG00000254366
18	lnc-ZFHX4-3	chr8:78388520-78388617	ENSG00000254366

No data

Extended variants
information (count: 766 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:766 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576268664	chr8:78388570-78388571	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs76339750	chr8:78388593-78388594	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs184153655	chr8:78388621-78388622	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs528952856	chr8:78388625-78388626	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs146100724	chr8:78388696-78388697	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs188447370	chr8:78388709-78388710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs180913523	chr8:78388712-78388713	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs185769249	chr8:78388716-78388717	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs376548738	chr8:78388726-78388727	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs551743089	chr8:78388736-78388737	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs75411072	chr8:78391281-78391282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs73693520	chr8:78391334-78391335	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs571916359	chr8:78391345-78391346	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs538192370	chr8:78391350-78391351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs11388155	chr8:78391360-78391361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs34149628	chr8:78391361-78391362	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs9694823	chr8:78391365-78391366	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs264798	chr8:78391387-78391388	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs192116518	chr8:78391434-78391435	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs374890403	chr8:78391455-78391456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs184381354	chr8:78391473-78391474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs560528764	chr8:78391486-78391487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs188694933	chr8:78391488-78391489	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs572809994	chr8:78391510-78391511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs7834113	chr8:78391550-78391551	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs564833718	chr8:78391571-78391572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs576665163	chr8:78391777-78391778	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs191684255	chr8:78391778-78391779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs563829063	chr8:78391780-78391781	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs533283830	chr8:78391784-78391785	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs367787588	chr8:78391786-78391787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs184548080	chr8:78391824-78391825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs549370425	chr8:78391867-78391868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs561080699	chr8:78391891-78391892	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs528491520	chr8:78391899-78391900	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs547359941	chr8:78391924-78391925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs189122576	chr8:78391946-78391947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs544859420	chr8:78392006-78392007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs1515076	chr8:78392008-78392009	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs535607307	chr8:78392087-78392088	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs182505218	chr8:78392214-78392215	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs535926019	chr8:78392243-78392244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs554550349	chr8:78392250-78392251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs572548334	chr8:78392265-78392266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs200303969	chr8:78392284-78392285	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs533533236	chr8:78392329-78392330	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs137956184	chr8:78392362-78392363	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs576701529	chr8:78392392-78392393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs544413620	chr8:78392443-78392444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs562506705	chr8:78392452-78392453	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
Sezary syndrome	18413736	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Colorectal cancer	19455253	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Urothelial cell carcinoma	18451213	CNVD
Intellectual disability	21802062	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78391200-78392400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:78391400-78391800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:78391400-78392600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:78396000-78396400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:78398600-78399600	Weak transcription	Pancreas	Pancrea
6	chr8:78399600-78399800	ZNF genes & repeats	Pancreas	Pancrea
7	chr8:78399800-78403400	Weak transcription	Pancreas	Pancrea
8	chr8:78401800-78402000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:78403600-78404600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:78411200-78411600	Enhancers	HSMMtube	muscle
11	chr8:78411400-78412200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:78411800-78412400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:78414600-78415200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:78416200-78416400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:78420600-78420800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:78420800-78422000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:78421000-78421400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr8:78421000-78421400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:78421000-78421600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr8:78421000-78421600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:78421400-78421600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:78421400-78421800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr8:78421600-78422000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr8:78430000-78430400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr8:78432400-78432800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:78432800-78433200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:78432800-78433400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr8:78435800-78436000	Enhancers	Brain Hippocampus Middle	brain
29	chr8:78438800-78439400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:78451400-78451800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:78451400-78452000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:78454400-78455000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:78460000-78460400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:78462800-78463200	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr8:78463000-78463400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:78463600-78466000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:78464800-78465200	ZNF genes & repeats	Aorta	Aorta
38	chr8:78466000-78466400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr8:78477000-78477800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:78477000-78477800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:78477200-78477800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:78477200-78477800	Enhancers	Adipose Nuclei	Adipose
43	chr8:78477200-78477800	Enhancers	Liver	Liver
44	chr8:78477200-78478000	Enhancers	Primary T cells from cord blood	blood

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