Variant report

Variant	nsv891254
Chromosome Location	chr8:106060970-106175867
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:78)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:78 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr8:106092097..106094824-chr8:106100318..106102369,2	K562	blood:
2	chr8:106108103..106110619-chr8:106122748..106124588,2	MCF-7	breast:
3	chr8:106102491..106104440-chr8:106106753..106108347,2	MCF-7	breast:
4	chr8:106082822..106084651-chr8:106097372..106099591,2	K562	blood:
5	chr8:106065191..106067685-chr8:106074185..106076444,2	K562	blood:
6	chr8:106124290..106126979-chr8:106301850..106304617,2	K562	blood:
7	chr8:106094210..106096629-chr8:106098616..106100274,3	K562	blood:
8	chr8:106110267..106112599-chr8:106425928..106428860,2	K562	blood:
9	chr8:106098062..106099625-chr8:106102482..106104994,2	MCF-7	breast:
10	chr8:106136690..106139159-chr8:106144055..106146884,2	MCF-7	breast:
11	chr8:106138231..106139133-chr8:106146754..106147617,2	MCF-7	breast:
12	chr8:106094210..106096629-chr8:106098616..106100274,3	K562	blood:
13	chr8:105800104..105800636-chr8:106104255..106105140,2	MCF-7	breast:
14	chr8:106057531..106060306-chr8:106071260..106074898,3	K562	blood:
15	chr8:106112581..106114529-chr8:106145312..106148061,2	K562	blood:
16	chr8:106165403..106167393-chr8:106167637..106170274,2	K562	blood:
17	chr8:106075494..106077166-chr8:106081357..106083896,2	MCF-7	breast:
18	chr8:105799797..105800672-chr8:106154225..106155144,4	MCF-7	breast:
19	chr8:106082783..106085372-chr8:106087525..106090132,2	K562	blood:
20	chr8:106110955..106112913-chr8:106113488..106116192,2	K562	blood:
21	chr8:106152151..106154623-chr8:106161739..106164454,2	K562	blood:
22	chr8:106163120..106165061-chr8:106166603..106168874,2	K562	blood:
23	chr8:106104770..106105296-chr8:106154309..106154928,2	MCF-7	breast:
24	chr8:106128189..106130965-chr8:106133459..106136157,2	K562	blood:
25	chr8:106147961..106149968-chr8:106159450..106161087,2	K562	blood:
26	chr8:106131031..106133323-chr8:106139720..106141521,2	K562	blood:
27	chr8:106115361..106119364-chr8:106123346..106125677,3	K562	blood:
28	chr8:106102491..106104440-chr8:106106753..106108347,2	MCF-7	breast:
29	chr8:106165403..106167393-chr8:106167637..106170274,2	K562	blood:
30	chr8:106098685..106100875-chr8:106101996..106103590,2	K562	blood:
31	chr8:106082783..106085372-chr8:106087525..106090132,2	K562	blood:
32	chr8:106095744..106098544-chr8:106100840..106104392,3	K562	blood:
33	chr8:106124060..106126969-chr8:106126998..106128732,2	K562	blood:
34	chr8:106104770..106105296-chr8:106154309..106154928,2	MCF-7	breast:
35	chr8:106084503..106086972-chr8:106332274..106334398,2	K562	blood:
36	chr8:106115361..106119364-chr8:106123346..106125677,3	K562	blood:
37	chr8:106101009..106105530-chr8:106328930..106333222,5	K562	blood:
38	chr8:106134095..106136736-chr8:106138615..106140889,2	K562	blood:
39	chr8:106098062..106099625-chr8:106102482..106104994,2	MCF-7	breast:
40	chr8:106095744..106098544-chr8:106100840..106104392,3	K562	blood:
41	chr8:106082822..106084651-chr8:106097372..106099591,2	K562	blood:
42	chr8:106128189..106130965-chr8:106133459..106136157,2	K562	blood:
43	chr8:106145928..106149549-chr8:106151108..106155039,3	K562	blood:
44	chr8:106162215..106165061-chr8:106166589..106168874,3	K562	blood:
45	chr8:106075494..106077166-chr8:106081357..106083896,2	MCF-7	breast:
46	chr8:106170292..106173280-chr8:106175111..106177873,2	K562	blood:
47	chr8:106104293..106104911-chr8:106785023..106785634,3	MCF-7	breast:
48	chr8:106124060..106126969-chr8:106126998..106128732,2	K562	blood:
49	chr8:106147961..106149968-chr8:106159450..106161087,2	K562	blood:
50	chr8:106128119..106129741-chr8:106131952..106134022,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRP12-1	chr8:106155088-106155975	ENSG00000254041.1

No data

Variant related genes	Relation type
ENSG00000197958	chromatin interactions
ENSG00000148356	chromatin interactions
ENSG00000169946	chromatin interactions

Extended variants
information (count: 2478 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:2478 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs285870	chr8:106060970-106060971	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs545649470	chr8:106060982-106060983	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs111358952	chr8:106060993-106060994	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs144036492	chr8:106060996-106060997	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs544729961	chr8:106061031-106061032	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs146259043	chr8:106061040-106061041	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs192044982	chr8:106061054-106061055	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs184665932	chr8:106061068-106061069	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs188638413	chr8:106061070-106061071	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs560378107	chr8:106061136-106061137	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs376826334	chr8:106072425-106072426	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs184659928	chr8:106072430-106072431	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs188629606	chr8:106072446-106072447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs141163372	chr8:106072450-106072451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs193000706	chr8:106072479-106072480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs144834934	chr8:106072486-106072487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs553676239	chr8:106072505-106072506	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs146668637	chr8:106072519-106072520	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs117909672	chr8:106072576-106072577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs538027923	chr8:106078807-106078808	Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs556123471	chr8:106078808-106078809	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs575690785	chr8:106078811-106078812	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs536302471	chr8:106078844-106078845	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs554650172	chr8:106078870-106078871	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs73697285	chr8:106078891-106078892	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs540252468	chr8:106078895-106078896	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs565213649	chr8:106078905-106078906	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs183563425	chr8:106078924-106078925	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs544783922	chr8:106078942-106078943	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs562991405	chr8:106078954-106078955	Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs530321479	chr8:106078958-106078959	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs547938118	chr8:106078991-106078992	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs560304926	chr8:106078997-106078998	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs527252191	chr8:106078999-106079000	Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs552231784	chr8:106079167-106079168	Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs570749221	chr8:106079189-106079190	Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs535860365	chr8:106079229-106079230	Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs368126653	chr8:106079268-106079269	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs555515025	chr8:106079274-106079275	Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs537796024	chr8:106079310-106079311	Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs117239375	chr8:106079345-106079346	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs372481130	chr8:106079349-106079350	Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs568121974	chr8:106079356-106079357	Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs188205932	chr8:106079366-106079367	Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs559418450	chr8:106080003-106080004	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs185319683	chr8:106080068-106080069	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs558632702	chr8:106080074-106080075	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570718916	chr8:106080082-106080083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189825497	chr8:106080130-106080131	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs143407247	chr8:106080193-106080194	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Multiple myeloma	16461302	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Sezary syndrome	18413736	CNVD
Urothelial cell carcinoma	18451213	CNVD
Colorectal cancer	21645411	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	20409316	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Oral squamous cell carcinoma	21853135	CNVD
Breast cancer	21364760	CNVD
Gastric cancer	22539939	CNVD

Chromatin state (count:204 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106072400-106072600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:106078800-106079400	Active TSS	Spleen	Spleen
3	chr8:106080000-106081000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:106080000-106082200	Weak transcription	Fetal Heart	heart
5	chr8:106081200-106081600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:106081200-106083200	Enhancers	NH-A	brain
7	chr8:106081600-106083000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:106081600-106083000	Enhancers	NHDF-Ad	bronchial
9	chr8:106081800-106082200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:106081800-106082200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:106081800-106082200	Enhancers	NHLF	lung
12	chr8:106081800-106082400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:106081800-106082400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:106081800-106082600	Enhancers	NHEK	skin
15	chr8:106081800-106083200	Enhancers	Hela-S3	cervix
16	chr8:106081800-106083200	Enhancers	HUVEC	blood vessel
17	chr8:106081800-106083400	Enhancers	HSMM	muscle
18	chr8:106081800-106084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:106082000-106082200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:106082000-106082400	Enhancers	HSMMtube	muscle
21	chr8:106082000-106082800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:106082200-106082600	Enhancers	Fetal Heart	heart
23	chr8:106082200-106084000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:106082200-106086200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:106082400-106085600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:106082600-106087600	Weak transcription	Fetal Heart	heart
27	chr8:106084000-106084200	Enhancers	HSMMtube	muscle
28	chr8:106084000-106084400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:106084400-106085000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:106085600-106086000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr8:106090800-106092600	Enhancers	K562	blood
32	chr8:106091800-106092600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:106091800-106092600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:106092600-106102400	Weak transcription	K562	blood
35	chr8:106094400-106094600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:106101200-106101800	Enhancers	Stomach Mucosa	stomach
37	chr8:106101200-106102000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:106101200-106102000	Enhancers	Brain Germinal Matrix	brain
39	chr8:106101400-106102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:106101400-106102600	Enhancers	Hela-S3	cervix
41	chr8:106101600-106102800	Enhancers	Fetal Kidney	kidney
42	chr8:106101600-106103800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr8:106101800-106102000	Enhancers	Ovary	ovary
44	chr8:106101800-106102400	Enhancers	Fetal Brain Female	brain
45	chr8:106101800-106102800	Enhancers	NHDF-Ad	bronchial
46	chr8:106101800-106103400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr8:106101800-106103400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr8:106101800-106103400	Enhancers	NH-A	brain
49	chr8:106102000-106102800	Weak transcription	Brain Germinal Matrix	brain
50	chr8:106102000-106103200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links