Variant report

Variant	nsv891398
Chromosome Location	chr8:115854395-115889749
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:115858972..115859777-chr8:116088522..116089323,3	MCF-7	breast:
2	chr8:115858790..115859787-chr8:116127493..116128052,2	MCF-7	breast:
3	chr8:115857407..115858047-chr8:116088791..116089518,2	MCF-7	breast:
4	chr8:115858350..115859560-chr8:116127592..116129068,6	MCF-7	breast:
5	chr8:115858302..115859090-chr8:116110965..116111686,2	MCF-7	breast:
6	chr8:115858454..115859582-chr8:116088622..116089592,9	MCF-7	breast:
7	chr8:115858587..115859263-chr8:116111343..116112027,3	MCF-7	breast:

Extended variants
information (count: 793 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:793 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559818535	chr8:115855004-115855005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs34094821	chr8:115855014-115855015	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs72674417	chr8:115855085-115855086	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs567297071	chr8:115855088-115855089	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs576364022	chr8:115855117-115855118	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs186339896	chr8:115855128-115855129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs73702657	chr8:115855134-115855135	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs149453272	chr8:115855139-115855140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538856220	chr8:115855148-115855149	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs553959257	chr8:115855258-115855259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs368787701	chr8:115855293-115855294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs182698743	chr8:115855349-115855350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs536588423	chr8:115855372-115855373	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs114018981	chr8:115855375-115855376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs143042239	chr8:115855387-115855388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs543372721	chr8:115855406-115855407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558643051	chr8:115855423-115855424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs116975519	chr8:115855449-115855450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs541106241	chr8:115855451-115855452	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs559932898	chr8:115855458-115855459	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs186897826	chr8:115855466-115855467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs542559771	chr8:115855504-115855505	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs11990755	chr8:115855519-115855520	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs35807370	chr8:115855527-115855528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs79600464	chr8:115855533-115855534	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs549773570	chr8:115855565-115855566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs532711636	chr8:115855566-115855567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs569876062	chr8:115855599-115855600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs571239711	chr8:115855634-115855635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs552723982	chr8:115855703-115855704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547165996	chr8:115855723-115855724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs75143205	chr8:115855729-115855730	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs190962344	chr8:115855774-115855775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs138720028	chr8:115855778-115855779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs369793645	chr8:115855848-115855849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs183534290	chr8:115855883-115855884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs537070998	chr8:115855898-115855899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs79166368	chr8:115856005-115856006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs35982506	chr8:115856024-115856025	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs541557638	chr8:115856070-115856071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs117075166	chr8:115856071-115856072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs72674418	chr8:115856081-115856082	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs553015673	chr8:115856195-115856196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs117783285	chr8:115856262-115856263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72674420	chr8:115856299-115856300	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs72674421	chr8:115856421-115856422	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs187500273	chr8:115856436-115856437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546503111	chr8:115856464-115856465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554943373	chr8:115856536-115856537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs564913492	chr8:115856559-115856560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Gastric cancer	17908304	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Non-small cell lung cancer	19010865	CNVD
small cell lung cancer	20016488	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21364760	CNVD
Neuroticism	17667963	CNVD
Papillary thyroid cancer	17515504	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164919	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:115855000-115856000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:115855200-115856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:115856000-115862000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:115862000-115862600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:115862600-115863600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:115863600-115866000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:115863800-115864400	Enhancers	HSMMtube	muscle
8	chr8:115863800-115864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:115864400-115867800	Weak transcription	HSMMtube	muscle
10	chr8:115864600-115868000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:115866000-115867800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:115867800-115868600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:115867800-115868600	Enhancers	HSMM	muscle
14	chr8:115867800-115868600	Enhancers	HSMMtube	muscle
15	chr8:115867800-115868600	Enhancers	NH-A	brain
16	chr8:115867800-115868800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:115868000-115868400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:115868000-115868600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:115868000-115868600	Enhancers	NHDF-Ad	bronchial
20	chr8:115868200-115868600	Enhancers	Osteobl	bone
21	chr8:115868600-115874000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:115874000-115874800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:115880800-115882400	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links