Variant report

Variant	nsv892170
Chromosome Location	chr9:6641895-6723861
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2807)
CpG islands
(count:1467)
Chromatin interactive
region (count:138)
LncRNA
region (count:52)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2807 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:6716174-6716454	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:6702813-6703015	K562	blood:	n/a	n/a
3	ARID3A	chr9:6645695-6646211	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:6667709-6667966	K562	blood:	n/a	n/a
5	ARID3A	chr9:6667619-6667991	HepG2	liver:	n/a	n/a
6	ARID3A	chr9:6641775-6641951	HepG2	liver:	n/a	n/a
7	ARID3A	chr9:6683465-6683727	K562	blood:	n/a	n/a
8	ARID3A	chr9:6680666-6681844	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:6673778-6673994	HepG2	liver:	n/a	n/a
10	ARID3A	chr9:6714320-6714869	HepG2	liver:	n/a	n/a
11	ARID3A	chr9:6664541-6665413	HepG2	liver:	n/a	n/a
12	ATF1	chr9:6681148-6681907	K562	blood:	n/a	n/a
13	ATF1	chr9:6683332-6683728	K562	blood:	n/a	n/a
14	ATF2	chr9:6683093-6683781	GM12878	blood:	n/a	n/a
15	ATF2	chr9:6680771-6682208	GM12878	blood:	n/a	n/a
16	ATF2	chr9:6680648-6682329	GM12878	blood:	n/a	n/a
17	ATF2	chr9:6703987-6704605	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr9:6673244-6673922	GM12878	blood:	n/a	n/a
19	ATF2	chr9:6703839-6704309	GM12878	blood:	n/a	n/a
20	ATF2	chr9:6689798-6690646	GM12878	blood:	n/a	n/a
21	ATF2	chr9:6715890-6716329	GM12878	blood:	n/a	chr9:6716129-6716140
22	ATF2	chr9:6654912-6655463	GM12878	blood:	n/a	n/a
23	ATF2	chr9:6703375-6704596	GM12878	blood:	n/a	n/a
24	ATF2	chr9:6722727-6723186	GM12878	blood:	n/a	n/a
25	ATF2	chr9:6683034-6683764	GM12878	blood:	n/a	n/a
26	ATF2	chr9:6715844-6716527	GM12878	blood:	n/a	chr9:6716129-6716140
27	ATF2	chr9:6681171-6681904	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr9:6722741-6723673	GM12878	blood:	n/a	n/a
29	ATF2	chr9:6703874-6704656	H1-hESC	embryonic stem cell:	n/a	n/a
30	ATF2	chr9:6680902-6681966	H1-hESC	embryonic stem cell:	n/a	n/a
31	ATF2	chr9:6654995-6655416	GM12878	blood:	n/a	n/a
32	ATF3	chr9:6703937-6704598	GM12878	blood:	n/a	chr9:6703954-6703967 chr9:6704101-6704111
33	ATF3	chr9:6664488-6664934	A549	lung:	n/a	n/a
34	ATF3	chr9:6681561-6681854	K562	blood:	n/a	chr9:6681721-6681741
35	ATF3	chr9:6681132-6681923	A549	lung:	n/a	chr9:6681281-6681290 chr9:6681270-6681290 chr9:6681721-6681741
36	ATF3	chr9:6704072-6704352	GM12878	blood:	n/a	chr9:6704101-6704111
37	ATF3	chr9:6681128-6681460	HepG2	liver:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
38	ATF3	chr9:6703900-6704493	H1-hESC	embryonic stem cell:	n/a	chr9:6703954-6703967 chr9:6704101-6704111
39	ATF3	chr9:6703940-6704551	HepG2	liver:	n/a	chr9:6703954-6703967 chr9:6704101-6704111
40	ATF3	chr9:6681099-6681405	GM12878	blood:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
41	ATF3	chr9:6680937-6681651	GM12878	blood:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
42	ATF3	chr9:6704051-6704512	A549	lung:	n/a	chr9:6704101-6704111
43	ATF3	chr9:6704052-6704432	HepG2	liver:	n/a	chr9:6704101-6704111
44	ATF3	chr9:6664294-6664873	A549	lung:	n/a	n/a
45	ATF3	chr9:6703946-6704478	A549	lung:	n/a	chr9:6703954-6703967 chr9:6704101-6704111
46	ATF3	chr9:6703972-6704567	H1-hESC	embryonic stem cell:	n/a	chr9:6704101-6704111
47	ATF3	chr9:6681111-6681416	H1-hESC	embryonic stem cell:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
48	ATF3	chr9:6681031-6681807	A549	lung:	n/a	chr9:6681281-6681290 chr9:6681270-6681290 chr9:6681721-6681741
49	ATF3	chr9:6681117-6681516	K562	blood:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
50	BACH1	chr9:6644871-6645230	H1-hESC	embryonic stem cell:	n/a	n/a

(count:1467 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:6645686-6645736	BJ	skin:	n/a
2	chr9:6681608-6681658	GM19239	blood:	n/a
3	chr9:6704574-6704624	AoSMC	blood vessel:	n/a
4	chr9:6645686-6645736	BJ	skin:	n/a
5	chr9:6681608-6681658	GM19239	blood:	n/a
6	chr9:6704574-6704624	AoSMC	blood vessel:	n/a
7	chr9:6645686-6645736	HRCEpiC	kidney:	n/a
8	chr9:6700000-6700050	AG04449	skin:	fetal
9	chr9:6716417-6716467	A549	lung:	n/a
10	chr9:6680923-6680973	HPAEpiC	pulmonary alveolar:	n/a
11	chr9:6644603-6644653	PANC-1	pancreas:	n/a
12	chr9:6681559-6681609	K562	blood:	n/a
13	chr9:6644603-6644653	GM12891	blood:	n/a
14	chr9:6680932-6680982	PANC-1	pancreas:	n/a
15	chr9:6645736-6645786	HMEC	breast:	n/a
16	chr9:6716007-6716057	HCF	heart:	n/a
17	chr9:6704178-6704228	SK-N-SH	brain:	n/a
18	chr9:6680932-6680982	BJ	skin:	n/a
19	chr9:6645736-6645786	HepG2	liver:	n/a
20	chr9:6707115-6707165	SK-N-SH_RA	brain:	n/a
21	chr9:6715032-6715082	PANC-1	pancreas:	n/a
22	chr9:6707115-6707165	HEK293	kidney:	embryo
23	chr9:6706149-6706199	AoSMC	blood vessel:	n/a
24	chr9:6645686-6645736	AoSMC	blood vessel:	n/a
25	chr9:6644369-6644419	HL-60	blood:	n/a
26	chr9:6703949-6703999	MCF10A-Er-Src	breast:	n/a
27	chr9:6703949-6703999	HRPEpiC	eye:	n/a
28	chr9:6716480-6716530	HAEpiC	amniotic membrane:	n/a
29	chr9:6716007-6716057	MCF-7	breast:	n/a
30	chr9:6645468-6645518	SK-N-SH	brain:	n/a
31	chr9:6704574-6704624	HPAEpiC	pulmonary alveolar:	n/a
32	chr9:6716480-6716530	AG04450	lung:	fetal
33	chr9:6716007-6716057	GM06990	blood:	n/a
34	chr9:6680800-6680850	HRCEpiC	kidney:	n/a
35	chr9:6681559-6681609	HL-60	blood:	n/a
36	chr9:6681415-6681465	AoSMC	blood vessel:	n/a
37	chr9:6644369-6644419	NB4	blood:	n/a
38	chr9:6645468-6645518	PANC-1	pancreas:	n/a
39	chr9:6716480-6716530	HepG2	liver:	n/a
40	chr9:6645736-6645786	K562	blood:	n/a
41	chr9:6644369-6644419	NH-A	brain:	n/a
42	chr9:6706149-6706199	AG09309	skin:	n/a
43	chr9:6680932-6680982	HNPCEpiC	eye:	n/a
44	chr9:6704178-6704228	HCF	heart:	n/a
45	chr9:6644603-6644653	GM12878	blood:	n/a
46	chr9:6706149-6706199	NT2-D1	testis:	n/a
47	chr9:6707115-6707165	HCPEpiC	choroid plexus:	n/a
48	chr9:6703949-6703999	HepG2	liver:	n/a
49	chr9:6683274-6683324	A549	lung:	n/a
50	chr9:6681415-6681465	NHBE	bronchial:	n/a

(count:138 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:6639393..6643031-chr9:6644244..6646064,4	MCF-7	breast:
2	chr9:6679508..6683848-chr9:6755336..6760985,13	K562	blood:
3	chr9:6681451..6683371-chr9:6705864..6707945,2	MCF-7	breast:
4	chr7:148892469..148893164-chr9:6680524..6681026,2	NB4	blood:
5	chr1:109632782..109633775-chr9:6680831..6681750,2	NB4	blood:
6	chr9:6681100..6681879-chrX:153626091..153627039,2	NB4	blood:
7	chr9:6584834..6585802-chr9:6667386..6668426,5	MCF-7	breast:
8	chr17:19551151..19551842-chr9:6681285..6682068,2	Hela-S3	cervix:
9	chr9:6623651..6625727-chr9:6679924..6681530,2	MCF-7	breast:
10	chr9:6702391..6705446-chr9:6756717..6760058,5	MCF-7	breast:
11	chr9:6714309..6715981-chr9:6723655..6726584,2	MCF-7	breast:
12	chr9:6698340..6700152-chr9:6701946..6704339,2	MCF-7	breast:
13	chr2:232530459..232531365-chr9:6680756..6681601,2	Hela-S3	cervix:
14	chr9:6682207..6684667-chr9:6707689..6709841,2	K562	blood:
15	chr9:6533272..6535800-chr9:6681069..6683891,2	K562	blood:
16	chr9:6663029..6667664-chr9:6679639..6683357,9	MCF-7	breast:
17	chr17:57916861..57918558-chr9:6681283..6683032,2	MCF-7	breast:
18	chr9:6615911..6617907-chr9:6681150..6682978,2	MCF-7	breast:
19	chr9:6693828..6696318-chr9:6715075..6717694,2	MCF-7	breast:
20	chr9:6662765..6664429-chr9:6666367..6668579,2	MCF-7	breast:
21	chr9:6715258..6717463-chr9:6718537..6720528,2	MCF-7	breast:
22	chr1:17230975..17231846-chr9:6681106..6681762,2	NB4	blood:
23	chr9:6669357..6672334-chr9:6679173..6682127,3	MCF-7	breast:
24	chr9:6662765..6664429-chr9:6666367..6668579,2	MCF-7	breast:
25	chr9:6680896..6681724-chr9:86535475..86536351,2	HCT-116	colon:
26	chr19:47734079..47734823-chr9:6681251..6681785,2	NB4	blood:
27	chr9:6699861..6702298-chr9:6702749..6705225,2	MCF-7	breast:
28	chr9:6672368..6674682-chr9:6676645..6678823,3	MCF-7	breast:
29	chr9:6683289..6684884-chr9:6702645..6704262,2	MCF-7	breast:
30	chr9:6681423..6683704-chr9:6710640..6713020,2	MCF-7	breast:
31	chr9:6411239..6413842-chr9:6680405..6682367,2	MCF-7	breast:
32	chr9:6412059..6414733-chr9:6680071..6683116,4	K562	blood:
33	chr9:6352849..6355311-chr9:6679612..6682199,2	MCF-7	breast:
34	chr17:7834821..7835603-chr9:6681148..6681758,2	NB4	blood:
35	chr1:115053255..115053998-chr9:6681371..6681985,2	NB4	blood:
36	chr9:6656639..6659482-chr9:6662780..6664665,3	MCF-7	breast:
37	chr16:2524772..2525666-chr9:6680779..6681752,2	NB4	blood:
38	chr9:6674752..6678702-chr9:6679022..6682873,7	K562	blood:
39	chr9:6714309..6715981-chr9:6723655..6726584,2	MCF-7	breast:
40	chr9:6672368..6674682-chr9:6676645..6678823,3	MCF-7	breast:
41	chr9:6681423..6683704-chr9:6710640..6713020,2	MCF-7	breast:
42	chr9:6680103..6682666-chr9:6784102..6786978,2	K562	blood:
43	chr9:6680639..6682955-chr9:6686831..6689135,2	MCF-7	breast:
44	chr9:6702551..6705246-chr9:6715022..6717677,6	MCF-7	breast:
45	chr12:91346285..91346785-chr9:6680944..6681459,2	NB4	blood:
46	chr9:6680669..6682912-chr9:6702581..6705387,2	MCF-7	breast:
47	chr9:6681473..6683386-chr9:6714578..6718490,5	MCF-7	breast:
48	chr9:6654607..6656764-chr9:6663214..6664911,2	K562	blood:
49	chr9:6652273..6654630-chr9:6673766..6675385,2	MCF-7	breast:
50	chr9:6663663..6666675-chr9:6715678..6718421,3	MCF-7	breast:

(count:52 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-1	chr9:6716183-6716616	NONHSAT130157
2	lnc-KDM4C-11	chr9:6694471-6694653	NONHSAT130150
3	lnc-KDM4C-2	chr9:6704179-6704343	XLOC_007275
4	lnc-KDM4C-1	chr9:6710863-6710997	NONHSAT130154
5	lnc-KDM4C-5	chr9:6669544-6669728	ENSG00000236924.1
6	lnc-KDM4C-1	chr9:6707873-6708981	NONHSAT130154
7	lnc-KDM4C-1	chr9:6719068-6719154	ENSG00000225489.1
8	lnc-KDM4C-12	chr9:6675284-6675614	NONHSAT130149
9	lnc-KDM4C-11	chr9:6697542-6697780	NONHSAT130150
10	lnc-KDM4C-1	chr9:6709071-6709370	NONHSAT130155
11	lnc-KDM4C-1	chr9:6708810-6708981	NONHSAT130155
12	lnc-KDM4C-1	chr9:6716548-6716616	ENSG00000225489.1
13	lnc-KDM4C-1	chr9:6718965-6718981	ENSG00000225489.2
14	lnc-KDM4C-1	chr9:6709071-6709154	NONHSAT130154
15	lnc-KDM4C-5	chr9:6670425-6670635	ENSG00000236924.1
16	lnc-KDM4C-1	chr9:6719071-6719154	ENSG00000225489.1
17	lnc-KDM4C-1	chr9:6716196-6716315	NONHSAT130158
18	lnc-KDM4C-1	chr9:6717873-6718149	NONHSAT130158
19	lnc-KDM4C-2	chr9:6704339-6704366	NONHSAT130152
20	lnc-KDM4C-1	chr9:6713527-6713630	NONHSAT130154
21	lnc-KDM4C-1	chr9:6719071-6719154	ENSG00000225489.2
22	lnc-KDM4C-2	chr9:6704453-6704653	XLOC_007275
23	lnc-KDM4C-14	chr9:6661651-6661936	NONHSAT130147
24	lnc-KDM4C-2	chr9:6707542-6707763	XLOC_007275
25	lnc-KDM4C-5	chr9:6670425-6670690	NONHSAT130145
26	lnc-KDM4C-1	chr9:6720863-6720997	ENSG00000225489.1
27	lnc-KDM4C-1	chr9:6717873-6719234	NONHSAT130157
28	lnc-KDM4C-2	chr9:6704406-6704653	NONHSAT130153
29	lnc-KDM4C-1	chr9:6709068-6709154	NONHSAT130156
30	lnc-KDM4C-13	chr9:6663657-6663792	NONHSAT130148
31	lnc-KDM4C-2	chr9:6707542-6707776	NONHSAT130153
32	lnc-KDM4C-1	chr9:6717873-6718981	ENSG00000225489.1
33	lnc-KDM4C-14	chr9:6661291-6661345	NONHSAT130146
34	lnc-KDM4C-1	chr9:6706548-6706616	NONHSAT130154
35	lnc-KDM4C-1	chr9:6716503-6716619	NONHSAT130156
36	lnc-KDM4C-1	chr9:6718810-6718981	ENSG00000225489.1
37	lnc-KDM4C-1	chr9:6720863-6720997	ENSG00000225489.2
38	lnc-KDM4C-1	chr9:6716946-6717438	NONHSAT130156
39	lnc-KDM4C-1	chr9:6719071-6719370	ENSG00000225489.1
40	lnc-KDM4C-2	chr9:6707542-6707780	XLOC_007275
41	lnc-KDM4C-14	chr9:6661783-6661845	NONHSAT130146
42	lnc-KDM4C-5	chr9:6645956-6646085	ENSG00000236924.1
43	lnc-KDM4C-13	chr9:6663156-6663366	NONHSAT130148
44	lnc-KDM4C-13	chr9:6662424-6662810	NONHSAT130148
45	lnc-KDM4C-1	chr9:6720863-6720997	ENSG00000225489.1
46	lnc-KDM4C-5	chr9:6669544-6669728	NONHSAT130145
47	lnc-KDM4C-1	chr9:6723527-6723630	ENSG00000225489.1
48	lnc-KDM4C-2	chr9:6704453-6704977	NONHSAT130152
49	lnc-KDM4C-2	chr9:6704471-6704653	XLOC_007275
50	lnc-KDM4C-14	chr9:6660407-6661044	NONHSAT130146

No data

Variant related genes	Relation type
ENSG00000236924	TF binding region
ENSG00000229611	TF binding region
ENSG00000232946	TF binding region
KDM4C	TF binding region
RNF2P1	TF binding region
ENSG00000229057	TF binding region
ENSG00000225489	TF binding region
RN7SL123P	TF binding region
GLDC	TF binding region
ENSG00000236924	CpG island
ENSG00000229611	CpG island
ENSG00000232946	CpG island
KDM4C	CpG island
RNF2P1	CpG island
ENSG00000229057	CpG island
ENSG00000225489	CpG island
RN7SL123P	CpG island
GLDC	CpG island
ENSG00000236778	chromatin interactions
ENSG00000197323	chromatin interactions
ENSG00000229057	chromatin interactions
ENSG00000273355	chromatin interactions
ENSG00000102786	chromatin interactions
ENSG00000170265	chromatin interactions
ENSG00000107077	chromatin interactions
ENSG00000177426	chromatin interactions
ENSG00000162065	chromatin interactions
ENSG00000051009	chromatin interactions
ENSG00000170037	chromatin interactions
ENSG00000072210	chromatin interactions
ENSG00000079999	chromatin interactions
ENSG00000147854	chromatin interactions
ENSG00000170473	chromatin interactions
ENSG00000215717	chromatin interactions
ENSG00000178445	chromatin interactions
ENSG00000117308	chromatin interactions
ENSG00000132259	chromatin interactions
ENSG00000150756	chromatin interactions
ENSG00000236924	chromatin interactions
ENSG00000200156	chromatin interactions
ENSG00000156875	chromatin interactions
ENSG00000273382	chromatin interactions
ENSG00000107036	chromatin interactions
ENSG00000173559	chromatin interactions
ENSG00000168944	chromatin interactions
ENSG00000272716	chromatin interactions
ENSG00000150753	chromatin interactions
ENSG00000272426	chromatin interactions
ENSG00000105327	chromatin interactions
ENSG00000134602	chromatin interactions
ENSG00000160271	chromatin interactions
ENSG00000266863	chromatin interactions
ENSG00000150768	chromatin interactions
ENSG00000100504	chromatin interactions
ENSG00000231381	chromatin interactions
ENSG00000232946	chromatin interactions
ENSG00000065357	chromatin interactions
ENSG00000161847	chromatin interactions
ENSG00000165115	chromatin interactions
ENSG00000101220	chromatin interactions
ENSG00000170043	chromatin interactions
ENSG00000147403	chromatin interactions
ENSG00000225489	chromatin interactions
ENSG00000105372	chromatin interactions
ENSG00000206147	chromatin interactions
ENSG00000229611	chromatin interactions
NXT2	miRNA target sites
DNMT3A	miRNA target sites

Extended variants
information (count: 4617 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:4617 , 50 per page) page: 1 2 3 4 5 6 7 ... 93

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1755608	chr9:6641895-6641896	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs371146129	chr9:6641896-6641897	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs149958323	chr9:6641904-6641905	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs1755609	chr9:6641917-6641918	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs36043080	chr9:6641958-6641959	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs565184438	chr9:6641983-6641984	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs577787542	chr9:6641984-6641985	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs114830779	chr9:6641987-6641988	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs563482221	chr9:6641993-6641994	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs145686842	chr9:6642000-6642001	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs548861837	chr9:6642025-6642026	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs560591625	chr9:6642038-6642039	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs373932876	chr9:6642042-6642043	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs546678208	chr9:6642061-6642062	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs571226875	chr9:6642066-6642067	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs539240265	chr9:6642084-6642085	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs183890811	chr9:6642124-6642125	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs569453856	chr9:6642147-6642148	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs373020342	chr9:6642249-6642250	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs375370617	chr9:6642251-6642252	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs56087241	chr9:6642252-6642253	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs538311163	chr9:6642256-6642257	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs555259333	chr9:6642327-6642328	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs533956070	chr9:6642349-6642350	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs528533231	chr9:6642373-6642374	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs533910595	chr9:6642397-6642398	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs559022782	chr9:6642451-6642452	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs553958729	chr9:6642454-6642455	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs544670815	chr9:6642482-6642483	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs556142185	chr9:6642486-6642487	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs563188964	chr9:6642515-6642516	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs575085395	chr9:6642628-6642629	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs187238737	chr9:6642656-6642657	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs192263611	chr9:6642670-6642671	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs577005534	chr9:6642694-6642695	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs545821312	chr9:6642707-6642708	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs372004540	chr9:6642711-6642712	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs143709995	chr9:6642736-6642737	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs546247970	chr9:6642737-6642738	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs2773508	chr9:6642740-6642741	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs532137645	chr9:6642813-6642814	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs559160720	chr9:6642907-6642908	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs141406287	chr9:6642908-6642909	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs147261393	chr9:6642917-6642918	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs542122279	chr9:6642919-6642920	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs562389186	chr9:6642944-6642945	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs569481651	chr9:6642948-6642949	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs536794981	chr9:6642969-6642970	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs2578291	chr9:6642973-6642974	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs567131987	chr9:6643011-6643012	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Dyslexia	22102821	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Ependymoma	20639864	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2035 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6633600-6642600	Weak transcription	NHEK	skin
2	chr9:6633600-6643200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:6633800-6644200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:6639800-6642200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:6640000-6644200	Weak transcription	Fetal Brain Male	brain
6	chr9:6640200-6642200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:6640200-6642200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:6640400-6644200	Weak transcription	Psoas Muscle	Psoas
9	chr9:6640600-6642200	Genic enhancers	HepG2	liver
10	chr9:6640600-6643000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:6640800-6642000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:6640800-6643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:6640800-6643200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:6641000-6642000	Genic enhancers	Liver	Liver
15	chr9:6641000-6642200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:6641000-6642200	Enhancers	Placenta	Placenta
17	chr9:6641200-6642200	Enhancers	Fetal Intestine Large	intestine
18	chr9:6641200-6642200	Enhancers	A549	lung
19	chr9:6641200-6644200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:6641400-6642200	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr9:6641400-6643600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:6641400-6644000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:6641400-6644200	Weak transcription	Gastric	stomach
24	chr9:6641600-6642000	Active TSS	GM12878-XiMat	blood
25	chr9:6641600-6643000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:6641600-6644000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:6641600-6644200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:6641600-6644200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:6641600-6644200	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:6641600-6644800	Weak transcription	Pancreas	Pancrea
31	chr9:6641800-6642000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr9:6641800-6644000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:6642000-6642200	Flanking Active TSS	GM12878-XiMat	blood
34	chr9:6642000-6642200	Enhancers	Hela-S3	cervix
35	chr9:6642000-6642200	Enhancers	HMEC	breast
36	chr9:6642000-6643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:6642000-6643200	Enhancers	Liver	Liver
38	chr9:6642000-6643400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr9:6642200-6642800	Enhancers	HepG2	liver
40	chr9:6642200-6643000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:6642200-6643000	Weak transcription	GM12878-XiMat	blood
42	chr9:6642200-6643200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:6642200-6643200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:6642200-6643800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr9:6642200-6644000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:6642200-6644200	Weak transcription	A549	lung
47	chr9:6642200-6645600	Weak transcription	Hela-S3	cervix
48	chr9:6642600-6643000	Enhancers	NHEK	skin
49	chr9:6642800-6643800	Flanking Active TSS	HepG2	liver
50	chr9:6643000-6643200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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