Variant report

Variant	nsv892202
Chromosome Location	chr9:7536158-7557471
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7052337..7053367-chr9:7536144..7537120,3	MCF-7	breast:
2	chr9:7401751..7402674-chr9:7535710..7536817,3	MCF-7	breast:

Extended variants
information (count: 997 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:997 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1986361	chr9:7536158-7536159	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs367950011	chr9:7536205-7536206	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs571964276	chr9:7536250-7536251	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182964522	chr9:7536276-7536277	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs35291592	chr9:7536291-7536292	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs371787264	chr9:7536339-7536340	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs553797170	chr9:7536379-7536380	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528364324	chr9:7536383-7536384	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572071623	chr9:7536384-7536385	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs539688656	chr9:7536401-7536402	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs140538342	chr9:7536441-7536442	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs551701639	chr9:7536449-7536450	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375854268	chr9:7536493-7536494	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs61020310	chr9:7536504-7536505	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs369721699	chr9:7536519-7536520	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs56200810	chr9:7536577-7536578	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs150491595	chr9:7536586-7536587	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs55871205	chr9:7536596-7536597	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs547334212	chr9:7536603-7536604	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs117961580	chr9:7536626-7536627	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs55645745	chr9:7536642-7536643	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552224715	chr9:7536667-7536668	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs188189734	chr9:7536679-7536680	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs538370640	chr9:7536701-7536702	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs549140445	chr9:7536731-7536732	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553521233	chr9:7536750-7536751	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs377454763	chr9:7536814-7536815	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10976372	chr9:7536852-7536853	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12351152	chr9:7536874-7536875	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs138306472	chr9:7536894-7536895	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs545838123	chr9:7536929-7536930	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs149462710	chr9:7536945-7536946	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs184961986	chr9:7536958-7536959	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs189757006	chr9:7536965-7536966	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12348929	chr9:7537004-7537005	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs145925060	chr9:7537014-7537015	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs10976373	chr9:7537017-7537018	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs61172270	chr9:7537040-7537041	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs540887535	chr9:7537048-7537049	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs373003362	chr9:7537051-7537052	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs573491434	chr9:7537070-7537071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs552137004	chr9:7537092-7537093	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs564544231	chr9:7537116-7537117	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs72695124	chr9:7537122-7537123	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs141684889	chr9:7537127-7537128	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs137983576	chr9:7537151-7537152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs534945486	chr9:7537166-7537167	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs568518294	chr9:7537167-7537168	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs34563150	chr9:7537201-7537202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12343341	chr9:7537237-7537238	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:142 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7535000-7542800	Weak transcription	Fetal Lung	lung
2	chr9:7536200-7537000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:7536200-7537000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:7536600-7536800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:7536600-7537000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr9:7536600-7537000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:7536600-7537000	Enhancers	Fetal Thymus	thymus
8	chr9:7536800-7537200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:7537000-7541800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:7537000-7542200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:7537000-7542200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:7537000-7542200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:7537200-7543000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:7540800-7549000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:7541600-7544000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr9:7541800-7542000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:7541800-7543400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:7542000-7542200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:7542000-7542800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:7542000-7543600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:7542200-7542800	Enhancers	Brain Hippocampus Middle	brain
22	chr9:7542200-7543000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:7542200-7543000	Enhancers	Fetal Muscle Leg	muscle
24	chr9:7542200-7543200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:7542200-7543200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:7542200-7543400	Enhancers	H9 Cell Line	embryonic stem cell
27	chr9:7542200-7543400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr9:7542200-7543600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:7542200-7543600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr9:7542200-7543800	Enhancers	Brain Anterior Caudate	brain
31	chr9:7542400-7542800	Enhancers	Brain Substantia Nigra	brain
32	chr9:7542400-7543200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr9:7542400-7543200	Enhancers	H1 Cell Line	embryonic stem cell
34	chr9:7542400-7543400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr9:7542400-7543800	Enhancers	Brain Cingulate Gyrus	brain
36	chr9:7542600-7542800	Enhancers	Brain Angular Gyrus	brain
37	chr9:7542600-7543000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr9:7542600-7543000	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr9:7542800-7543000	Enhancers	Fetal Lung	lung
40	chr9:7542800-7543200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:7542800-7543200	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr9:7542800-7543200	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr9:7542800-7543200	Flanking Active TSS	Brain Substantia Nigra	brain
44	chr9:7543000-7543200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:7543000-7543200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr9:7543000-7543200	Enhancers	Fetal Brain Female	brain
47	chr9:7543000-7544000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:7543000-7548800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr9:7543200-7543400	Enhancers	Brain Angular Gyrus	brain
50	chr9:7543200-7543600	Enhancers	Brain Hippocampus Middle	brain

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