Variant report

Variant	nsv892220
Chromosome Location	chr9:8031935-8102278
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-16	chr9:8085728-8085987	uc_249_+
2	lnc-C9orf123-8	chr9:8085728-8085987	uc_249_-

Extended variants
information (count: 693 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:693 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1407463	chr9:8031935-8031936	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs530514949	chr9:8031954-8031955	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs142710101	chr9:8031975-8031976	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs1407464	chr9:8031977-8031978	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs551603273	chr9:8032014-8032015	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs61396418	chr9:8032024-8032025	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs546544643	chr9:8032030-8032031	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs571521083	chr9:8032031-8032032	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538270006	chr9:8032057-8032058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs538603063	chr9:8032167-8032168	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs114406897	chr9:8032169-8032170	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs558579347	chr9:8032171-8032172	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs575247409	chr9:8032206-8032207	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs118154844	chr9:8032208-8032209	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs554841734	chr9:8032222-8032223	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs574772105	chr9:8032228-8032229	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs537517842	chr9:8032258-8032259	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs35322848	chr9:8032319-8032320	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs555918169	chr9:8032320-8032321	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs573914464	chr9:8032331-8032332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs541427396	chr9:8032387-8032388	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs56787885	chr9:8032444-8032445	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs578196707	chr9:8032448-8032449	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs545420501	chr9:8032454-8032455	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs189008291	chr9:8032479-8032480	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs191910005	chr9:8032493-8032494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs540564247	chr9:8032501-8032502	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs542287648	chr9:8032589-8032590	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs560666870	chr9:8032608-8032609	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs56410680	chr9:8032618-8032619	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs147634373	chr9:8032647-8032648	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs571194960	chr9:8032658-8032659	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs573158543	chr9:8032689-8032690	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs532421403	chr9:8032698-8032699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs550919427	chr9:8032702-8032703	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs545083263	chr9:8032724-8032725	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs372770294	chr9:8032769-8032770	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs377298377	chr9:8032771-8032772	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs72701894	chr9:8032773-8032774	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs151055832	chr9:8032777-8032778	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs151337318	chr9:8032787-8032788	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs569042811	chr9:8032795-8032796	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs57225048	chr9:8032798-8032799	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs200341296	chr9:8032799-8032800	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs541335758	chr9:8032816-8032817	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs374377227	chr9:8032830-8032831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs79212152	chr9:8032880-8032881	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs537556216	chr9:8032907-8032908	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs371772708	chr9:8032909-8032910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs142256756	chr9:8032968-8032969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8025200-8032600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:8028200-8033800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:8030400-8032200	Weak transcription	Fetal Heart	heart
4	chr9:8030800-8033800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:8032200-8032800	Enhancers	Fetal Heart	heart
6	chr9:8032600-8033200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:8033800-8034200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:8053000-8053400	Enhancers	Spleen	Spleen
9	chr9:8053200-8053400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:8053200-8053800	Enhancers	Esophagus	oesophagus
11	chr9:8056600-8057400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:8062600-8063000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:8062600-8063000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:8062600-8063000	ZNF genes & repeats	Pancreas	Pancrea
15	chr9:8065200-8065600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:8065400-8065800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:8065400-8065800	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr9:8065400-8065800	Active TSS	Stomach Smooth Muscle	stomach
19	chr9:8065400-8065800	Active TSS	A549	lung
20	chr9:8065400-8065800	Active TSS	Hela-S3	cervix
21	chr9:8067200-8068000	Weak transcription	A549	lung
22	chr9:8070800-8071800	Enhancers	Brain Anterior Caudate	brain
23	chr9:8071000-8071400	Enhancers	Brain Cingulate Gyrus	brain
24	chr9:8071000-8071400	Enhancers	Lung	lung
25	chr9:8071000-8071600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr9:8071000-8071600	Enhancers	Brain Substantia Nigra	brain
27	chr9:8071000-8071600	Enhancers	Fetal Heart	heart
28	chr9:8071000-8071800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:8071000-8071800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr9:8071000-8071800	Enhancers	Brain Germinal Matrix	brain
31	chr9:8071000-8071800	Enhancers	Brain Hippocampus Middle	brain
32	chr9:8071200-8071600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:8071200-8071800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:8071400-8071800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr9:8071600-8071800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:8071600-8072000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:8071800-8074600	Weak transcription	Brain Germinal Matrix	brain
38	chr9:8072000-8072600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:8074600-8075000	Enhancers	Brain Germinal Matrix	brain
40	chr9:8074600-8075000	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr9:8078800-8079200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr9:8084200-8086600	Enhancers	Brain Germinal Matrix	brain
43	chr9:8085000-8086400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:8085200-8085600	Enhancers	Fetal Lung	lung
45	chr9:8085200-8086400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:8085600-8086600	Bivalent Enhancer	Fetal Lung	lung
47	chr9:8093200-8093600	Enhancers	H9 Cell Line	embryonic stem cell
48	chr9:8095400-8096400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:8095400-8096800	Enhancers	Brain Germinal Matrix	brain
50	chr9:8095600-8096600	Enhancers	Cortex derived primary cultured neurospheres	brain

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