Variant report
| Variant | nsv892272 |
|---|---|
| Chromosome Location | chr9:9673320-9718066 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs544935951 | chr9:9679031-9679032 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs548264684 | chr9:9679034-9679035 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs149517996 | chr9:9679044-9679045 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs12686302 | chr9:9679061-9679062 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs534104108 | chr9:9679067-9679068 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs192638199 | chr9:9679079-9679080 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs184432035 | chr9:9679091-9679092 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs187766045 | chr9:9679112-9679113 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs556273986 | chr9:9679114-9679115 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs200056615 | chr9:9679116-9679117 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs568634804 | chr9:9679121-9679122 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs568044173 | chr9:9679122-9679123 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs201905009 | chr9:9679134-9679135 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs201356962 | chr9:9679136-9679137 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs535470125 | chr9:9679159-9679160 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs542803867 | chr9:9679195-9679196 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs537505146 | chr9:9679220-9679221 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs370470852 | chr9:9679230-9679231 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs559691595 | chr9:9679233-9679234 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs199905693 | chr9:9679240-9679241 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs192819422 | chr9:9679274-9679275 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs571677581 | chr9:9679282-9679283 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs184798059 | chr9:9679287-9679288 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs190099519 | chr9:9679302-9679303 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs547784062 | chr9:9679357-9679358 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs540525975 | chr9:9679382-9679383 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs181661540 | chr9:9679406-9679407 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs117194307 | chr9:9679408-9679409 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs35826939 | chr9:9679433-9679434 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs565599877 | chr9:9679439-9679440 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs113742940 | chr9:9679459-9679460 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs79803342 | chr9:9679503-9679504 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs184632522 | chr9:9679513-9679514 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs567810149 | chr9:9679531-9679532 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs563312796 | chr9:9679548-9679549 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 36 | rs530488038 | chr9:9679556-9679557 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs527645509 | chr9:9679561-9679562 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 38 | rs552546671 | chr9:9679627-9679628 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 39 | rs570759410 | chr9:9679641-9679642 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 40 | rs531566847 | chr9:9679655-9679656 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 41 | rs189439196 | chr9:9679656-9679657 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 42 | rs182092221 | chr9:9679690-9679691 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 43 | rs535217000 | chr9:9679741-9679742 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 44 | rs553780611 | chr9:9679755-9679756 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 45 | rs185905483 | chr9:9679769-9679770 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 46 | rs368896141 | chr9:9679782-9679783 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 47 | rs560997563 | chr9:9679807-9679808 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 48 | rs539034128 | chr9:9679890-9679891 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 49 | rs139646560 | chr9:9679891-9679892 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 50 | rs577098941 | chr9:9679955-9679956 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:113)
| Disease | PMID | Source |
|---|---|---|
| abnormal development | 18461090 | CNVD |
| Disorders of sex development | 21048976 | CNVD |
| Honadal dysgenesis | 21048976 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Lung cancer | 16740712 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Follicular lymphoma | 17170743 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Retinoblastoma | 22278416 | CNVD |
| Splenic marginal zone lymphoma | 18492102 | CNVD |
| Melanoma | 18172304 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Myopathy | 18421352 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Acute lymphoblastic leukemia | 18957548 | CNVD |
| Myeloproliferative neoplasm | 17564968 | CNVD |
| Malignant meningioma | 17937814 | CNVD |
| Glioma | 21971842 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Chordoma | 18071362 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
| Cancer | 20164919 | CNVD |
| Chronic myeloid leukemia | 21384125 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Lung cancer | 18438408 | CNVD |
| XY gonadal dysgenesis | 20685758 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Oral cancer | 21386901 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Esophageal adenocarcinoma | 19417022 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Myelodysplastic syndrome | 21251322 | CNVD |
| Autism | 22495311 | CNVD |
| Hepatocellular carcinoma | 18803288 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma | 19074898 | CNVD |
| Malignant melanoma | 19074898 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| Cancer | 20164920 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Schizophrenia | 20838587 | CNVD |
| Glioblastoma | 18772890 | CNVD |
| Glioblastoma multiforme | 21390271 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Autism | 20858261 | CNVD |
| Epilepsy | 20858261 | CNVD |
| Mental retardation | 20858261 | CNVD |
| Developmental delay | 21147756 | CNVD |
| small cell lung cancer | 21764851 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Glioma | 17123091 | CNVD |
| Lung cancer | 16773561 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Gastric cancer | 16891809 | CNVD |
| Mental retardation | 17847001 | CNVD |
| Cutaneous squamous cell carcinomas | 17420988 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Pilocytic astrocytoma | 18670637 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Lung adenocarcinoma | 17982442 | CNVD |
| Gastric cancer | 22315472 | CNVD |
| Chordoma | 21215367 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:9679000-9680200 | Enhancers | Liver | Liver |
| 2 | chr9:9680200-9681200 | Weak transcription | Liver | Liver |
| 3 | chr9:9681200-9681400 | Enhancers | Liver | Liver |
| 4 | chr9:9714000-9714800 | Enhancers | Fetal Kidney | kidney |
