Variant report

Variant	nsv892292
Chromosome Location	chr9:9802458-9869714
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-10	chr9:9803717-9803784	ENSG00000230920

Extended variants
information (count: 1408 )
Associated
traits (count: 114 )

Variant overlapped rSNPs/rCNVs (count:1408 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529167681	chr9:9803733-9803734	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs144216024	chr9:9803758-9803759	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs559482759	chr9:9803765-9803766	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs549591883	chr9:9805220-9805221	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs4742623	chr9:9805232-9805233	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs555073245	chr9:9805254-9805255	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs58537661	chr9:9805261-9805262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs370189480	chr9:9805265-9805266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs57345147	chr9:9805278-9805279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs185830553	chr9:9805387-9805388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs190595597	chr9:9805396-9805397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs537971437	chr9:9805406-9805407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs562868791	chr9:9805409-9805410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs144863117	chr9:9805426-9805427	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs183196306	chr9:9805446-9805447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs550176168	chr9:9805453-9805454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs566980215	chr9:9805454-9805455	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs188857465	chr9:9805456-9805457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs10977997	chr9:9805496-9805497	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs568372558	chr9:9805507-9805508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs112540226	chr9:9805510-9805511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs191986395	chr9:9805518-9805519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs538490988	chr9:9805521-9805522	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs558871406	chr9:9805529-9805530	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs534240272	chr9:9805631-9805632	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs538209865	chr9:9805634-9805635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs111231939	chr9:9805679-9805680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs555014033	chr9:9805682-9805683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs574795789	chr9:9805769-9805770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs148559790	chr9:9805823-9805824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547463413	chr9:9805826-9805827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs554005439	chr9:9805828-9805829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs559453457	chr9:9805841-9805842	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs142925983	chr9:9805859-9805860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs554167393	chr9:9805888-9805889	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs182663564	chr9:9805910-9805911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs574134656	chr9:9805919-9805920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs562804833	chr9:9805938-9805939	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs10816186	chr9:9805954-9805955	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs187675617	chr9:9805962-9805963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs114197541	chr9:9805976-9805977	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs189202988	chr9:9807823-9807824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs372863337	chr9:9807837-9807838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs564006305	chr9:9807855-9807856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs533067654	chr9:9807862-9807863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs1768875	chr9:9807867-9807868	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs563341947	chr9:9807883-9807884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs370332573	chr9:9807890-9807891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs149606860	chr9:9807906-9807907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs189689119	chr9:9807913-9807914	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:114)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung adenocarcinoma	17982442	CNVD
Breast cancer	21611746	CNVD
Schizophrenia	23813976	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9805200-9806000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr9:9807800-9808000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr9:9820000-9821000	Enhancers	NH-A	brain
4	chr9:9825200-9825400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:9825400-9825600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:9832800-9834600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:9834200-9834600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:9845200-9845800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:9845400-9846200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:9845400-9846200	Enhancers	Dnd41	blood
11	chr9:9845800-9846800	Enhancers	Primary hematopoietic stem cells	blood
12	chr9:9845800-9847000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:9845800-9847800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:9846200-9847000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:9846200-9847000	Flanking Active TSS	Dnd41	blood
16	chr9:9846600-9847000	Active TSS	GM12878-XiMat	blood
17	chr9:9846800-9847200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:9847000-9848200	Enhancers	Dnd41	blood
19	chr9:9847000-9848400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:9847000-9848600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:9847200-9848400	Enhancers	Primary hematopoietic stem cells	blood
22	chr9:9847600-9847800	Enhancers	GM12878-XiMat	blood
23	chr9:9847600-9848200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:9847600-9848200	Enhancers	Placenta	Placenta
25	chr9:9848200-9855000	Weak transcription	Placenta	Placenta
26	chr9:9848600-9855400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:9853600-9853800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:9854000-9855600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:9855000-9855200	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr9:9855000-9855600	Enhancers	Dnd41	blood
31	chr9:9855000-9856200	Enhancers	Fetal Thymus	thymus
32	chr9:9855000-9856400	Enhancers	Placenta	Placenta
33	chr9:9855200-9855400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:9855200-9855600	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr9:9855400-9855600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:9855400-9855800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr9:9855400-9855800	Enhancers	Primary T cells from cord blood	blood
38	chr9:9855400-9855800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:9855400-9856000	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr9:9855400-9856000	Enhancers	Thymus	Thymus
41	chr9:9855600-9855800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:9855600-9856000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:9855600-9856000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:9855600-9857400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:9855600-9861000	Weak transcription	Dnd41	blood
46	chr9:9855800-9856000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:9856000-9856200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:9856200-9860800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:9856200-9862400	Weak transcription	Fetal Thymus	thymus
50	chr9:9857400-9858400	Enhancers	Pancreatic Islets	Pancreatic Islet

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