Variant report

Variant	nsv892309
Chromosome Location	chr9:10158866-10192290
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 715 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:715 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77405222	chr9:10159604-10159605	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs73396361	chr9:10159616-10159617	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs569243877	chr9:10159638-10159639	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs183284273	chr9:10159675-10159676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs140108478	chr9:10159680-10159681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs551322869	chr9:10159681-10159682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188798701	chr9:10159687-10159688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs554109160	chr9:10159720-10159721	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538163705	chr9:10159736-10159737	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs112979909	chr9:10159816-10159817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs190884917	chr9:10159825-10159826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs541088196	chr9:10159827-10159828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs564278151	chr9:10159858-10159859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs533135315	chr9:10159867-10159868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs550116159	chr9:10159884-10159885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs569888680	chr9:10159897-10159898	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs529168442	chr9:10159906-10159907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs549147034	chr9:10159990-10159991	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs377345072	chr9:10159999-10160000	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs182737361	chr9:10160018-10160019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs575015121	chr9:10160019-10160020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs534794130	chr9:10160028-10160029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs370898843	chr9:10160057-10160058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs557800374	chr9:10160066-10160067	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs571522033	chr9:10160103-10160104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs537280370	chr9:10160109-10160110	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs557507741	chr9:10160196-10160197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs533633254	chr9:10160200-10160201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs554015554	chr9:10164418-10164419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs184476840	chr9:10164453-10164454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs369089470	chr9:10164463-10164464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs547593487	chr9:10164465-10164466	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs189037698	chr9:10164490-10164491	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs148722530	chr9:10164501-10164502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs549952565	chr9:10164520-10164521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs569985632	chr9:10164534-10164535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs574078700	chr9:10164540-10164541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs535585209	chr9:10164554-10164555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs2382195	chr9:10164807-10164808	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs189065267	chr9:10164818-10164819	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs146395846	chr9:10164864-10164865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs567644503	chr9:10164893-10164894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs5896374	chr9:10164894-10164895	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs397966479	chr9:10164906-10164907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs180895175	chr9:10164912-10164913	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs561794703	chr9:10164915-10164916	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs527983172	chr9:10164951-10164952	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs572155343	chr9:10164957-10164958	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs541267786	chr9:10164972-10164973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs184013088	chr9:10164978-10164979	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:115)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung adenocarcinoma	17982442	CNVD
Breast cancer	21611746	CNVD
Melanoma	22183965	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10159600-10160200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:10164400-10164600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr9:10164800-10165400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:10164800-10166600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:10165000-10165400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:10165200-10165400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr9:10165400-10167800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:10165400-10173600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:10166600-10167800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:10167200-10168000	Enhancers	Fetal Brain Male	brain
11	chr9:10167600-10168000	Enhancers	Fetal Heart	heart
12	chr9:10167800-10168200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:10167800-10168600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:10168000-10168400	Weak transcription	Fetal Heart	heart
15	chr9:10168000-10173600	Weak transcription	Fetal Brain Male	brain
16	chr9:10168400-10168600	Enhancers	Fetal Heart	heart
17	chr9:10168600-10172000	Weak transcription	Fetal Heart	heart
18	chr9:10172000-10174000	Enhancers	Fetal Heart	heart
19	chr9:10173600-10174400	Enhancers	Fetal Brain Male	brain
20	chr9:10173600-10174800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:10173800-10174200	Enhancers	Fetal Brain Female	brain
22	chr9:10186600-10187000	Enhancers	Fetal Heart	heart
23	chr9:10187000-10189400	Weak transcription	Fetal Heart	heart
24	chr9:10189400-10189600	Enhancers	Fetal Heart	heart
25	chr9:10191400-10191600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr9:10191800-10193000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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