Variant report

Variant	nsv892680
Chromosome Location	chr9:18089614-18267185
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:18254973..18255762-chr9:19028514..19029097,2	MCF-7	breast:
2	chr1:121482984..121485223-chr9:18152239..18154322,2	MCF-7	breast:
3	chr9:18149518..18150319-chr9:18207841..18208492,3	MCF-7	breast:
4	chr9:18211031..18213386-chr9:18220463..18223215,2	MCF-7	breast:
5	chr9:18189998..18192028-chr9:18194754..18196298,2	MCF-7	breast:
6	chr9:18254776..18255758-chr9:18790832..18791755,3	MCF-7	breast:
7	chr9:17528534..17529118-chr9:18207797..18208372,2	MCF-7	breast:
8	chr9:18016854..18017748-chr9:18207853..18208432,2	MCF-7	breast:
9	chr9:18149518..18150319-chr9:18207841..18208492,3	MCF-7	breast:
10	chr9:17810623..17811776-chr9:18207859..18208526,4	MCF-7	breast:
11	chr9:18254775..18255482-chr9:18823832..18824683,3	MCF-7	breast:
12	chr9:18254805..18255425-chr9:18442379..18443060,2	MCF-7	breast:
13	chr9:17811052..17811931-chr9:18212974..18213863,4	MCF-7	breast:
14	chr9:18189998..18192028-chr9:18194754..18196298,2	MCF-7	breast:
15	chr9:18211031..18213386-chr9:18220463..18223215,2	MCF-7	breast:
16	chr9:17531412..17532247-chr9:18212958..18213842,2	MCF-7	breast:
17	chr9:17810712..17811652-chr9:18207926..18208828,3	MCF-7	breast:
18	chr9:18255104..18255666-chr9:18823787..18824360,2	MCF-7	breast:
19	chr9:18255224..18255738-chr9:19028566..19029077,2	K562	blood:
20	chr9:18254620..18255832-chr9:18825877..18827696,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178031	chromatin interactions

Extended variants
information (count: 6639 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:6639 , 50 per page) page: 1 2 3 4 5 6 7 ... 133

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10756932	chr9:18089614-18089615	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs58601904	chr9:18089634-18089635	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs553083351	chr9:18089636-18089637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs529184568	chr9:18089639-18089640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541813442	chr9:18089641-18089642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557020174	chr9:18089648-18089649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575405305	chr9:18089714-18089715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs10756933	chr9:18089727-18089728	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs564267668	chr9:18089735-18089736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368470153	chr9:18089767-18089768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs372822856	chr9:18089781-18089782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540068764	chr9:18089790-18089791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs78542921	chr9:18089832-18089833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs10810897	chr9:18089835-18089836	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs75054275	chr9:18089845-18089846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs570041326	chr9:18089849-18089850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs530850359	chr9:18089853-18089854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184141006	chr9:18089858-18089859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571087322	chr9:18089860-18089861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs189470205	chr9:18089903-18089904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371569759	chr9:18089917-18089918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143744234	chr9:18089953-18089954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs568135474	chr9:18089956-18089957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs148148635	chr9:18089994-18089995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs556959183	chr9:18090026-18090027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs112840336	chr9:18090030-18090031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558188182	chr9:18090065-18090066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs181270150	chr9:18090094-18090095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150652847	chr9:18090097-18090098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs202005088	chr9:18090105-18090106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs118120209	chr9:18090111-18090112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540008996	chr9:18090257-18090258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs185050227	chr9:18090282-18090283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs188884923	chr9:18090348-18090349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs534165000	chr9:18090351-18090352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs181636953	chr9:18090361-18090362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563678096	chr9:18090390-18090391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs369415315	chr9:18090432-18090433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs552328696	chr9:18090467-18090468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs571083742	chr9:18090482-18090483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185960532	chr9:18090541-18090542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547185461	chr9:18090564-18090565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs568683242	chr9:18090583-18090584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200086019	chr9:18090608-18090609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs55647099	chr9:18090622-18090623	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs538835422	chr9:18090639-18090640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568902418	chr9:18090643-18090644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs574022276	chr9:18090670-18090671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs557472556	chr9:18090693-18090694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572775089	chr9:18090717-18090718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Ovarian cancer	19835627	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Chordoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:496 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18079000-18114800	Weak transcription	Aorta	Aorta
2	chr9:18098600-18099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:18099000-18105200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:18103800-18104000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:18104000-18105200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:18104200-18104400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:18104600-18105800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:18105200-18107600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:18105200-18108000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:18105400-18107400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:18105600-18107600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:18105600-18108000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:18105600-18108200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:18105800-18106200	Enhancers	Colon Smooth Muscle	Colon
15	chr9:18105800-18107200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:18105800-18107400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:18105800-18108000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:18106000-18106200	Enhancers	Fetal Brain Female	brain
19	chr9:18106000-18106600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:18106000-18107400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr9:18106000-18107400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:18106200-18114800	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:18106400-18106800	Enhancers	Brain Substantia Nigra	brain
24	chr9:18107200-18107600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:18107200-18108400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr9:18107600-18108000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr9:18107800-18108400	Enhancers	Primary hematopoietic stem cells	blood
28	chr9:18110600-18111000	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:18111000-18115600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:18114000-18116200	Enhancers	Adipose Nuclei	Adipose
31	chr9:18114200-18114600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:18114200-18114800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr9:18114600-18115200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:18114600-18115200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:18114800-18115000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:18114800-18115200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr9:18114800-18115400	Enhancers	Ovary	ovary
38	chr9:18114800-18115600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:18114800-18116000	Enhancers	Aorta	Aorta
40	chr9:18114800-18116400	Enhancers	Colon Smooth Muscle	Colon
41	chr9:18115200-18115600	Enhancers	Rectal Smooth Muscle	rectum
42	chr9:18115200-18116200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:18115200-18116200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr9:18115400-18118400	Weak transcription	Ovary	ovary
45	chr9:18115600-18116000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:18115600-18116200	Enhancers	Stomach Smooth Muscle	stomach
47	chr9:18116000-18116200	Enhancers	Rectal Smooth Muscle	rectum
48	chr9:18116000-18127600	Weak transcription	Aorta	Aorta
49	chr9:18116200-18116400	Enhancers	Fetal Heart	heart
50	chr9:18116200-18117800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links