Variant report

Variant	nsv892766
Chromosome Location	chr9:22742136-22765106
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr9:22763062-22763162	IMR90	lung:	n/a	n/a
2	MYC	chr9:22764734-22764856	GM12878	blood:	n/a	n/a
3	POLR2A	chr9:22764690-22764858	Gliobla	brain:	n/a	n/a
4	POLR2A	chr9:22755197-22755280	GM12878	blood:	n/a	n/a
5	SPI1	chr9:22759401-22759579	GM12891	blood:	n/a	n/a
6	SPI1	chr9:22759413-22759537	K562	blood:	n/a	n/a
7	SPI1	chr9:22759320-22759583	GM12891	blood:	n/a	n/a
8	SPI1	chr9:22759423-22759532	K562	blood:	n/a	n/a
9	SPI1	chr9:22759405-22759552	GM12878	blood:	n/a	n/a
10	STAT3	chr9:22751426-22751626	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DMRTA1-14	chr9:22759737-22759837	NONHSAT130447
2	lnc-DMRTA1-13	chr9:22757174-22757265	NONHSAT130448
3	lnc-DMRTA1-14	chr9:22764211-22764434	NONHSAT130447
4	lnc-DMRTA1-13	chr9:22757961-22758315	NONHSAT130448
5	lnc-DMRTA1-14	chr9:22754997-22755223	NONHSAT130447

No data

Variant related genes	Relation type
ENSG00000236739	TF binding region
ENSG00000224549	TF binding region

Extended variants
information (count: 1198 )
Associated
traits (count: 153 )

Variant overlapped rSNPs/rCNVs (count:1198 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs640648	chr9:22742136-22742137	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs551348588	chr9:22742154-22742155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566570970	chr9:22742156-22742157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs376766879	chr9:22742159-22742160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs562636294	chr9:22742160-22742161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs184060437	chr9:22742175-22742176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs527779037	chr9:22742211-22742212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs147950638	chr9:22742218-22742219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs571196991	chr9:22742219-22742220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs533781767	chr9:22742287-22742288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs188241674	chr9:22742326-22742327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201708463	chr9:22742337-22742338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs386733596	chr9:22742338-22742339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111261676	chr9:22742339-22742340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs199960448	chr9:22742340-22742341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs115298275	chr9:22742351-22742352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs373407403	chr9:22742403-22742404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs116020990	chr9:22742457-22742458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs558999190	chr9:22742459-22742460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141981575	chr9:22742476-22742477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541417175	chr9:22742491-22742492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561224210	chr9:22742508-22742509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs62572528	chr9:22742519-22742520	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs553967771	chr9:22742521-22742522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs78449258	chr9:22742536-22742537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145730715	chr9:22742565-22742566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs76895536	chr9:22742586-22742587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs138467018	chr9:22742592-22742593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs527356195	chr9:22742593-22742594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs547385918	chr9:22742598-22742599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs566894306	chr9:22742678-22742679	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs149258981	chr9:22742684-22742685	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550045423	chr9:22742756-22742757	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs569151838	chr9:22742791-22742792	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs184086280	chr9:22742860-22742861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs188864672	chr9:22742874-22742875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs62572529	chr9:22742888-22742889	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs534772294	chr9:22742928-22742929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555022024	chr9:22742968-22742969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs574873374	chr9:22742978-22742979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542986714	chr9:22742983-22742984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs575376997	chr9:22742990-22742991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576212455	chr9:22742996-22742997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545199056	chr9:22743003-22743004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs564898158	chr9:22743011-22743012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191400118	chr9:22743026-22743027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs13291651	chr9:22743039-22743040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540704660	chr9:22743059-22743060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs552782897	chr9:22743075-22743076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560071	chr9:22743107-22743108	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:153)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21525872	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22725800-22801600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:22738800-22778800	Weak transcription	Liver	Liver
3	chr9:22740600-22742600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:22742600-22742800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:22749200-22749400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:22755000-22755400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:22763800-22803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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