Variant report

Variant	nsv892767
Chromosome Location	chr9:22781709-22934249
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:64119199..64121386-chr9:22867154..22869791,2	MCF-7	breast:
2	chr9:22813272..22814142-chr9:23088887..23089663,2	MCF-7	breast:
3	chr11:73470070..73470855-chr9:22831107..22832031,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DMRTA1-2	chr9:22820737-22821597	ENSG00000234840.1
2	lnc-DMRTA1-15	chr9:22840524-22841967	NONHSAT130451
3	lnc-DMRTA1-2	chr9:22823251-22824212	ENSG00000234840.1
4	lnc-DMRTA1-15	chr9:22842077-22844127	NONHSAT130451
5	lnc-DMRTA1-15	chr9:22847494-22847573	NONHSAT130451

No data

Extended variants
information (count: 5511 )
Associated
traits (count: 153 )

Variant overlapped rSNPs/rCNVs (count:5511 , 50 per page) page: 1 2 3 4 5 6 7 ... 111

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547279	chr9:22781709-22781710	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs566019388	chr9:22781713-22781714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376996704	chr9:22781717-22781718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs148564794	chr9:22781757-22781758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs186689172	chr9:22781793-22781794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs190711666	chr9:22781797-22781798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs142910331	chr9:22781834-22781835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138636707	chr9:22781867-22781868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs35433417	chr9:22781869-22781870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs3029423	chr9:22781870-22781871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs34850751	chr9:22781872-22781873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs397829081	chr9:22781873-22781874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557501511	chr9:22781890-22781891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs147746705	chr9:22781914-22781915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs566433999	chr9:22781927-22781928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200910713	chr9:22781958-22781959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs142598507	chr9:22781996-22781997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs183946118	chr9:22782024-22782025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs687893	chr9:22782066-22782067	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs74833465	chr9:22782067-22782068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541412676	chr9:22782069-22782070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146902197	chr9:22782075-22782076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs574969492	chr9:22782077-22782078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188596509	chr9:22782079-22782080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543921477	chr9:22782082-22782083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs564268966	chr9:22782121-22782122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs532987250	chr9:22782125-22782126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs555491877	chr9:22782129-22782130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs373799086	chr9:22782162-22782163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs555946581	chr9:22782181-22782182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs147574939	chr9:22782185-22782186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs560179612	chr9:22782189-22782190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs529239543	chr9:22782211-22782212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370429112	chr9:22782230-22782231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192956157	chr9:22782262-22782263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs10965455	chr9:22782276-22782277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs567528613	chr9:22782352-22782353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs118159660	chr9:22782357-22782358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568488970	chr9:22782365-22782366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs371064037	chr9:22782453-22782454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550804038	chr9:22782499-22782500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556600680	chr9:22782516-22782517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs570976890	chr9:22782518-22782519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs184867867	chr9:22782532-22782533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553568552	chr9:22782588-22782589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs187313776	chr9:22782633-22782634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs191807564	chr9:22782644-22782645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs535770668	chr9:22782667-22782668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554911089	chr9:22782679-22782680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs574905085	chr9:22782737-22782738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:153)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21525872	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-small cell lung cancer	16651412	CNVD
Pancreatic cancer	21811587	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22725800-22801600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:22763800-22803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:22791800-22792600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:22792200-22792600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:22792200-22792600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:22792200-22792800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:22792200-22793400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:22794400-22794600	Bivalent Enhancer	Left Ventricle	heart
9	chr9:22797600-22803800	Weak transcription	Liver	Liver
10	chr9:22803600-22805000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:22803800-22804800	ZNF genes & repeats	Liver	Liver
12	chr9:22805000-22816800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:22809400-22809800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:22809800-22816200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:22813400-22814000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:22813600-22814000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:22813800-22814000	Enhancers	Adipose Nuclei	Adipose
18	chr9:22814000-22816600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:22814000-22824400	Weak transcription	Adipose Nuclei	Adipose
20	chr9:22815000-22815600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:22816200-22816400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:22816400-22816600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:22816600-22817200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:22816600-22817600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:22816600-22818200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:22816600-22818200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:22816800-22817600	Enhancers	Osteobl	bone
28	chr9:22816800-22817800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:22816800-22818200	Enhancers	HSMM	muscle
30	chr9:22816800-22818400	Enhancers	NH-A	brain
31	chr9:22817200-22817800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:22817200-22818400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:22817200-22827600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:22817800-22822400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:22818200-22822200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:22818200-22844800	Weak transcription	Liver	Liver
37	chr9:22822200-22822800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:22822400-22822600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:22831400-22831800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:22836200-22837000	ZNF genes & repeats	Pancreas	Pancrea
41	chr9:22844400-22845200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:22844400-22845400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
43	chr9:22844600-22845200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:22844800-22845200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:22844800-22845400	ZNF genes & repeats	Liver	Liver
46	chr9:22847200-22847600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
47	chr9:22848000-22848200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr9:22856000-22856400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:22856000-22856400	Enhancers	H9 Cell Line	embryonic stem cell
50	chr9:22856000-22856400	Enhancers	HUES48 Cell Line	embryonic stem cell

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