Variant report

Variant	nsv892795
Chromosome Location	chr9:24170867-24488294
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2090 )
Associated
traits (count: 147 )

Variant overlapped rSNPs/rCNVs (count:2090 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569874736	chr9:24177402-24177403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs116754186	chr9:24177409-24177410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376416775	chr9:24177413-24177414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs532565786	chr9:24177436-24177437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs552465065	chr9:24177453-24177454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs565503233	chr9:24177462-24177463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189005584	chr9:24177463-24177464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs111346481	chr9:24177470-24177471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs185485740	chr9:24177499-24177500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs536761464	chr9:24177506-24177507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs556293556	chr9:24177517-24177518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs34688047	chr9:24177518-24177519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs576599604	chr9:24177527-24177528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs113606899	chr9:24177566-24177567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113162231	chr9:24177577-24177578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs190098604	chr9:24177588-24177589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs144913168	chr9:24177628-24177629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs541434370	chr9:24177688-24177689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530143923	chr9:24177704-24177705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs561305510	chr9:24177769-24177770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs181053809	chr9:24177780-24177781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200823698	chr9:24177781-24177782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs74409203	chr9:24177815-24177816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs543936284	chr9:24177830-24177831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs117725818	chr9:24177834-24177835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs532350343	chr9:24177835-24177836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372452377	chr9:24177866-24177867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs376059300	chr9:24177915-24177916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs565939258	chr9:24177921-24177922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201424223	chr9:24177932-24177933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199596836	chr9:24177968-24177969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs117016624	chr9:24178023-24178024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs149035174	chr9:24178038-24178039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs114803763	chr9:24178043-24178044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536722969	chr9:24178046-24178047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531391871	chr9:24178068-24178069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs556655592	chr9:24178075-24178076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs185892936	chr9:24178076-24178077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs370395575	chr9:24178104-24178105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558932676	chr9:24178134-24178135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs200913619	chr9:24178181-24178182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201907253	chr9:24178194-24178195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs142034758	chr9:24178225-24178226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192411322	chr9:24178251-24178252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs370415379	chr9:24178256-24178257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs549700172	chr9:24178350-24178351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs79270775	chr9:24178391-24178392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs76709442	chr9:24178392-24178393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs183967687	chr9:24178395-24178396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs72702160	chr9:24178397-24178398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:147)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Renal cell carcinoma	21215367	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:203 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24177400-24180200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:24180200-24180600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:24189800-24191000	Enhancers	HSMMtube	muscle
4	chr9:24190400-24190800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:24207800-24208200	Active TSS	Aorta	Aorta
6	chr9:24216600-24217200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:24217200-24218200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:24218200-24218400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:24240800-24241200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:24242600-24243000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:24242600-24243000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:24242800-24243200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:24250600-24251000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:24260000-24260600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:24290800-24291000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:24291200-24291400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:24292400-24293600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:24292400-24294800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr9:24292600-24293400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr9:24292600-24295000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:24292800-24293000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:24292800-24293800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr9:24292800-24295000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr9:24293000-24293200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:24293000-24293400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr9:24293000-24293600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:24293000-24293800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr9:24293000-24294000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr9:24293200-24293600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:24293400-24293800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr9:24293400-24294000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr9:24293400-24294400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:24293600-24294000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:24293600-24294000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr9:24293600-24294600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:24293800-24294000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr9:24293800-24295400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr9:24294000-24294600	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr9:24294000-24295000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr9:24294400-24294600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:24294600-24294800	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr9:24295000-24296000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:24295400-24296000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:24296000-24296200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr9:24296200-24296400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr9:24303000-24303400	Active TSS	Fetal Heart	heart
47	chr9:24314400-24314800	Active TSS	Gastric	stomach
48	chr9:24326800-24328200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:24327000-24327600	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr9:24327600-24331200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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