Variant report

Variant	nsv892811
Chromosome Location	chr9:25098890-25176251
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:25096345..25098093-chr9:25100107..25101850,2	MCF-7	breast:
2	chr9:25175084..25177209-chr9:25178097..25179794,2	MCF-7	breast:
3	chr9:25135319..25136895-chr9:25139782..25142029,2	MCF-7	breast:
4	chr9:25135319..25136895-chr9:25139782..25142029,2	MCF-7	breast:

Extended variants
information (count: 249 )
Associated
traits (count: 143 )

Variant overlapped rSNPs/rCNVs (count:249 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116109955	chr9:25115011-25115012	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs79856425	chr9:25115031-25115032	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs551059176	chr9:25115036-25115037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571174466	chr9:25115089-25115090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs144613655	chr9:25115113-25115114	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs547217988	chr9:25115120-25115121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs181907098	chr9:25115150-25115151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs147887155	chr9:25115151-25115152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs3118252	chr9:25115154-25115155	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs569230970	chr9:25115156-25115157	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs538262089	chr9:25115163-25115164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs557697984	chr9:25115243-25115244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs577528080	chr9:25115247-25115248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs540091427	chr9:25115251-25115252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs553650929	chr9:25115282-25115283	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs78887367	chr9:25115319-25115320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs75740466	chr9:25115325-25115326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs148015110	chr9:25115352-25115353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs112071333	chr9:25115367-25115368	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs186556386	chr9:25115400-25115401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs568663878	chr9:25115414-25115415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs139387722	chr9:25115459-25115460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs150061846	chr9:25115498-25115499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs527274186	chr9:25115501-25115502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs76976218	chr9:25115513-25115514	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs189770087	chr9:25115519-25115520	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs529519622	chr9:25115545-25115546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs182949234	chr9:25115554-25115555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs28698306	chr9:25115558-25115559	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs537914092	chr9:25115559-25115560	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs557735139	chr9:25115597-25115598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs561923663	chr9:25115608-25115609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs528417222	chr9:25115630-25115631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186222200	chr9:25115681-25115682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs145317884	chr9:25115697-25115698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572529197	chr9:25115700-25115701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs117628942	chr9:25115703-25115704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536459537	chr9:25115754-25115755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556043407	chr9:25115764-25115765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs576088609	chr9:25115765-25115766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544822508	chr9:25115796-25115797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149195690	chr9:25115797-25115798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs145126971	chr9:25115808-25115809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146446843	chr9:25115821-25115822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs560788860	chr9:25115822-25115823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs529527822	chr9:25115826-25115827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs528953481	chr9:25115860-25115861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373085391	chr9:25115882-25115883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs562895248	chr9:25115883-25115884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs531931206	chr9:25115885-25115886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:143)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Melanoma	17363583	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Lung cancer	21569311	CNVD
Pancreatic cancer	21811587	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25115000-25115600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:25115600-25117400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:25117400-25118000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:25118000-25119600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:25118400-25120200	Enhancers	Fetal Lung	lung
6	chr9:25119600-25120000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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