Variant report

Variant	nsv892823
Chromosome Location	chr9:25298264-25349769
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:25321931..25322446-chr9:25349957..25350559,2	MCF-7	breast:
2	chr9:25346387..25349185-chr9:25351167..25353046,2	MCF-7	breast:

Extended variants
information (count: 239 )
Associated
traits (count: 144 )

Variant overlapped rSNPs/rCNVs (count:239 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527359532	chr9:25310807-25310808	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs529343269	chr9:25310815-25310816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs115900249	chr9:25310832-25310833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs547156383	chr9:25310874-25310875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs568603637	chr9:25310886-25310887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs369878141	chr9:25310893-25310894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs145313294	chr9:25310907-25310908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs10757519	chr9:25310965-25310966	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs181711899	chr9:25310967-25310968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs200714620	chr9:25310996-25310997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs571470130	chr9:25311033-25311034	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs527489289	chr9:25311037-25311038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs187134698	chr9:25311060-25311061	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs1627269	chr9:25311064-25311065	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs536333694	chr9:25311108-25311109	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs556231073	chr9:25311184-25311185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs147188748	chr9:25311194-25311195	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs538600817	chr9:25311254-25311255	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539860967	chr9:25311259-25311260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs10812220	chr9:25311297-25311298	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs578189222	chr9:25311307-25311308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs140550108	chr9:25311334-25311335	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs553924561	chr9:25311363-25311364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs573830237	chr9:25311397-25311398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs542727285	chr9:25311402-25311403	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs190835814	chr9:25311403-25311404	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs531608786	chr9:25311414-25311415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs75672392	chr9:25311422-25311423	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs565077810	chr9:25311437-25311438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs527583433	chr9:25311442-25311443	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs1751816	chr9:25311467-25311468	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs567455042	chr9:25311484-25311485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs529882045	chr9:25311500-25311501	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs549633184	chr9:25311555-25311556	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs569686483	chr9:25311566-25311567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs373360993	chr9:25311615-25311616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs144719284	chr9:25311629-25311630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs61426218	chr9:25311632-25311633	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs571634867	chr9:25311680-25311681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs145762650	chr9:25311718-25311719	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs118033886	chr9:25311724-25311725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs375887714	chr9:25311801-25311802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs573916755	chr9:25311808-25311809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs1348328	chr9:25311842-25311843	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs1751815	chr9:25311850-25311851	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs12685037	chr9:25311859-25311860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs576468971	chr9:25311864-25311865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs74582812	chr9:25311885-25311886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs540690014	chr9:25311886-25311887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs148918159	chr9:25311929-25311930	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:144)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Lung cancer	21569311	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25310800-25312000	Enhancers	Fetal Brain Male	brain
2	chr9:25311000-25311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:25311000-25311400	Enhancers	Adipose Nuclei	Adipose
4	chr9:25323400-25323800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:25323800-25325400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:25325400-25325600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:25325600-25326000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:25325800-25326200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:25325800-25326200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:25326000-25326400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:25334400-25334600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:25347200-25348400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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