Variant report

Variant	nsv892824
Chromosome Location	chr9:25363830-25426760
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:25415705..25417320-chr9:25422040..25423787,2	MCF-7	breast:
2	chr9:25408828..25410955-chr9:25413147..25416054,3	MCF-7	breast:
3	chr9:25415705..25417320-chr9:25422040..25423787,2	MCF-7	breast:
4	chr9:25408828..25410955-chr9:25413147..25416054,3	MCF-7	breast:
5	chr9:25418497..25420216-chr9:25675741..25678077,2	MCF-7	breast:

Extended variants
information (count: 1676 )
Associated
traits (count: 146 )

Variant overlapped rSNPs/rCNVs (count:1676 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4083606	chr9:25376632-25376633	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs542563787	chr9:25376645-25376646	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs558387755	chr9:25376647-25376648	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs116767305	chr9:25376654-25376655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs541059756	chr9:25376667-25376668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs554581726	chr9:25376692-25376693	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs574432230	chr9:25376928-25376929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs3936875	chr9:25376992-25376993	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs3849934	chr9:25377010-25377011	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs3849935	chr9:25377021-25377022	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs376246627	chr9:25377045-25377046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs574565338	chr9:25377081-25377082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs545556722	chr9:25377082-25377083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs137855360	chr9:25377085-25377086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs571484179	chr9:25377094-25377095	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs527765077	chr9:25377101-25377102	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs547417805	chr9:25377110-25377111	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs367778544	chr9:25377160-25377161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs529979549	chr9:25377185-25377186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs549819520	chr9:25377242-25377243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs569901071	chr9:25377256-25377257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs532539288	chr9:25377316-25377317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs552330366	chr9:25377328-25377329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs187870953	chr9:25377370-25377371	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs149459808	chr9:25377401-25377402	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs117870591	chr9:25377409-25377410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs114401377	chr9:25377411-25377412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs537004947	chr9:25377421-25377422	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556600666	chr9:25377422-25377423	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs112747205	chr9:25377484-25377485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs576642853	chr9:25377493-25377494	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs545307204	chr9:25377494-25377495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs536347309	chr9:25377506-25377507	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs554943887	chr9:25377507-25377508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs146081870	chr9:25377576-25377577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs181125819	chr9:25379406-25379407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs139748934	chr9:25379433-25379434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs570958546	chr9:25379437-25379438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs144549132	chr9:25379512-25379513	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs186487148	chr9:25379524-25379525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs573275590	chr9:25379530-25379531	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs535806783	chr9:25379544-25379545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs74433257	chr9:25379578-25379579	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs575417690	chr9:25379597-25379598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs74901075	chr9:25379603-25379604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191359431	chr9:25379632-25379633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs181521560	chr9:25379647-25379648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146605366	chr9:25379652-25379653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559776588	chr9:25379664-25379665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs528874744	chr9:25379689-25379690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:146)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Lung cancer	21569311	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Non-small cell lung cancer	16651412	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Barrett''s syndrome	19417022	CNVD

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25376600-25377400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr9:25377000-25377600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:25377000-25377600	Enhancers	Fetal Muscle Trunk	muscle
4	chr9:25377200-25377600	Enhancers	Psoas Muscle	Psoas
5	chr9:25379400-25379600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:25379600-25380600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:25380600-25381200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:25380600-25381200	Enhancers	Adipose Nuclei	Adipose
9	chr9:25380800-25381400	Enhancers	Fetal Lung	lung
10	chr9:25381200-25382000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:25381200-25383200	Weak transcription	Adipose Nuclei	Adipose
12	chr9:25382000-25382200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:25382200-25383400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:25383200-25383600	Enhancers	Adipose Nuclei	Adipose
15	chr9:25383400-25383600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:25385400-25385600	Enhancers	Adipose Nuclei	Adipose
17	chr9:25390000-25395400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:25393000-25393200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:25393200-25394000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:25394000-25394800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:25394000-25396200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:25394200-25395000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:25394200-25396200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr9:25394200-25396600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
25	chr9:25394400-25395400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:25394600-25399000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr9:25394800-25395600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr9:25395000-25395200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:25395000-25397400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:25395200-25396600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:25395400-25396400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr9:25395400-25398800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:25395600-25396000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:25396000-25396200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:25396000-25398000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr9:25396200-25396400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr9:25396200-25398200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr9:25396200-25398400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr9:25396200-25399200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr9:25396400-25396800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:25396400-25397200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr9:25396600-25396800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr9:25396600-25396800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:25396600-25396800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr9:25396800-25397400	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr9:25396800-25397600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:25396800-25397800	Enhancers	H1 Cell Line	embryonic stem cell
48	chr9:25396800-25415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr9:25397200-25397600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr9:25397400-25397600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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