Variant report

Variant	nsv892825
Chromosome Location	chr9:25455760-25519176
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:25478036..25481264-chr9:25482615..25485278,3	MCF-7	breast:
2	chr9:25478036..25481264-chr9:25482615..25485278,3	MCF-7	breast:
3	chr9:25518647..25520597-chr9:25677256..25680213,2	MCF-7	breast:
4	chr9:25490280..25493000-chr9:25503726..25505680,2	MCF-7	breast:
5	chr9:25450846..25453685-chr9:25454705..25457278,2	MCF-7	breast:
6	chr9:25517372..25520682-chr9:25675267..25678566,4	MCF-7	breast:
7	chr9:25515475..25518346-chr9:25676938..25679402,2	MCF-7	breast:
8	chr9:25490280..25493000-chr9:25503726..25505680,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198680	chromatin interactions

Extended variants
information (count: 722 )
Associated
traits (count: 147 )

Variant overlapped rSNPs/rCNVs (count:722 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199696838	chr9:25460819-25460820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs373551280	chr9:25460822-25460823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs367805192	chr9:25460832-25460833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs189447573	chr9:25460837-25460838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs191207844	chr9:25460838-25460839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs547209046	chr9:25460907-25460908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs571952816	chr9:25460913-25460914	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs539368957	chr9:25460936-25460937	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs550448356	chr9:25460946-25460947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184528400	chr9:25460947-25460948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs569682850	chr9:25460982-25460983	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs537108885	chr9:25460990-25460991	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs189450830	chr9:25461035-25461036	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs573727236	chr9:25461044-25461045	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs148964196	chr9:25461046-25461047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs552783606	chr9:25461051-25461052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs143651241	chr9:25461090-25461091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs10812251	chr9:25461099-25461100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs563311474	chr9:25461139-25461140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs181374526	chr9:25461158-25461159	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs113058062	chr9:25461172-25461173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs561212565	chr9:25461191-25461192	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs528618721	chr9:25461233-25461234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs17176698	chr9:25461258-25461259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs571889852	chr9:25461274-25461275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs532820971	chr9:25461299-25461300	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs141074330	chr9:25461332-25461333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs569624441	chr9:25461340-25461341	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs536639123	chr9:25461352-25461353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs73642368	chr9:25461357-25461358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567235852	chr9:25461406-25461407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs146907448	chr9:25461453-25461454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs181750395	chr9:25461553-25461554	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs186368909	chr9:25461554-25461555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs535026459	chr9:25461556-25461557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs544865936	chr9:25461559-25461560	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs556831651	chr9:25461564-25461565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs114615255	chr9:25461595-25461596	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs191096451	chr9:25461598-25461599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs180764409	chr9:25461631-25461632	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs528550017	chr9:25461632-25461633	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs540744825	chr9:25461637-25461638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs186063809	chr9:25461659-25461660	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs565437494	chr9:25461671-25461672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs532756130	chr9:25461702-25461703	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs78097916	chr9:25461741-25461742	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs563030648	chr9:25461744-25461745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs530459944	chr9:25461799-25461800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs548680701	chr9:25461875-25461876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs567278221	chr9:25461913-25461914	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:147)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
early-passage human iPS cells	21368824	CNVD
Barrett''s syndrome	19417022	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Chordoma	21215367	CNVD
polycythaemia	22829968	CNVD

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25460800-25461600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:25461000-25463800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:25461400-25462000	Enhancers	NHEK	skin
4	chr9:25463200-25463800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:25471800-25472800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:25472000-25472200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:25472000-25472400	Enhancers	NHEK	skin
8	chr9:25472000-25472600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:25472200-25472400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:25472200-25472400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:25472800-25473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:25473800-25475000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:25474200-25474400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:25479800-25480000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:25480000-25481200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:25480600-25482600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:25480800-25482000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:25481200-25481800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:25481200-25481800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:25481200-25482000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:25481200-25482000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr9:25481200-25482200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:25481200-25482400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:25496800-25497400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:25497400-25497800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:25497800-25498000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:25505000-25506000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:25505200-25505800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:25505400-25506000	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr9:25513400-25514000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr9:25513400-25514600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr9:25513800-25514200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:25514600-25518200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:25517400-25520200	Enhancers	Placenta	Placenta
35	chr9:25517600-25518000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:25518000-25519000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:25518200-25520000	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr9:25519000-25519400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr9:25519000-25519600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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