Variant report

Variant	nsv892828
Chromosome Location	chr9:25554068-25576240
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 366 )
Associated
traits (count: 128 )

Variant overlapped rSNPs/rCNVs (count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2482516	chr9:25554068-25554069	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs555492917	chr9:25554102-25554103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs573675757	chr9:25554142-25554143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs541075141	chr9:25554146-25554147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs574649416	chr9:25554166-25554167	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs559412513	chr9:25554173-25554174	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs577727156	chr9:25554199-25554200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs545538361	chr9:25554221-25554222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs368700204	chr9:25554234-25554235	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs542150287	chr9:25554236-25554237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs143757514	chr9:25554253-25554254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs1412382	chr9:25554326-25554327	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs549398693	chr9:25554360-25554361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs561597897	chr9:25554361-25554362	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs111755625	chr9:25554385-25554386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs148148346	chr9:25554400-25554401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs565731069	chr9:25554401-25554402	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs1412383	chr9:25554429-25554430	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs7040934	chr9:25554448-25554449	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs569735756	chr9:25554471-25554472	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs537278644	chr9:25554476-25554477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs112648218	chr9:25554477-25554478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs191401770	chr9:25554506-25554507	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs112927010	chr9:25554534-25554535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs540023937	chr9:25554568-25554569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs7041428	chr9:25554613-25554614	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs117188880	chr9:25554655-25554656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113276445	chr9:25554690-25554691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs575729467	chr9:25554742-25554743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs1412384	chr9:25554743-25554744	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs78367729	chr9:25554752-25554753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139571468	chr9:25554769-25554770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs540996409	chr9:25554804-25554805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs143372205	chr9:25554822-25554823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532976212	chr9:25554839-25554840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs10757552	chr9:25554840-25554841	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs189662850	chr9:25554856-25554857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs75763961	chr9:25554869-25554870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs548776501	chr9:25554883-25554884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs112567460	chr9:25554914-25554915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs386733785	chr9:25554960-25554961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs10966962	chr9:25554961-25554962	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs79513313	chr9:25554989-25554990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs147152790	chr9:25555003-25555004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs557174106	chr9:25555004-25555005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112090696	chr9:25555023-25555024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs542804199	chr9:25555025-25555026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs555222279	chr9:25555034-25555035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs573542262	chr9:25555062-25555063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs540912287	chr9:25555089-25555090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:128)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Barrett''s syndrome	19417022	CNVD
Non-small cell lung cancer	16651412	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25553600-25554600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr9:25554600-25555400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:25555400-25555800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:25555800-25556000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:25556000-25558000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr9:25557400-25558800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:25561800-25562800	Enhancers	Placenta	Placenta
8	chr9:25562000-25562200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:25562200-25562600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:25562400-25563600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:25562800-25563600	Weak transcription	Placenta	Placenta
12	chr9:25563600-25563800	Enhancers	Placenta	Placenta
13	chr9:25563600-25564000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:25570800-25571200	Enhancers	Fetal Brain Female	brain
15	chr9:25570800-25571200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr9:25571000-25571400	Active TSS	Fetal Brain Male	brain
17	chr9:25576200-25577600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links