Variant report

Variant	nsv892849
Chromosome Location	chr9:26225232-26284317
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26237527..26239681-chr9:26241580..26243699,2	MCF-7	breast:
2	chr9:26237527..26239681-chr9:26241580..26243699,2	MCF-7	breast:

Extended variants
information (count: 2484 )
Associated
traits (count: 117 )

Variant overlapped rSNPs/rCNVs (count:2484 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1369207	chr9:26225232-26225233	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs149793126	chr9:26225263-26225264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs34614670	chr9:26225267-26225268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs192264624	chr9:26225319-26225320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs529541197	chr9:26225335-26225336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs548111185	chr9:26225336-26225337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs144758949	chr9:26225406-26225407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs367609106	chr9:26225421-26225422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs540025878	chr9:26225422-26225423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558341047	chr9:26225447-26225448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35848430	chr9:26225465-26225466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs139864966	chr9:26225484-26225485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145329709	chr9:26225487-26225488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs183527603	chr9:26225497-26225498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34418588	chr9:26225516-26225517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574530013	chr9:26225527-26225528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs185235255	chr9:26225550-26225551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs554039592	chr9:26225651-26225652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs373177914	chr9:26225664-26225665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572798197	chr9:26225720-26225721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs35583685	chr9:26225741-26225742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs189729125	chr9:26225763-26225764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs563973880	chr9:26225764-26225765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs549229822	chr9:26225796-26225797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs576106570	chr9:26225830-26225831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs543558581	chr9:26225831-26225832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs542499499	chr9:26225834-26225835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs147668296	chr9:26225837-26225838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs142610172	chr9:26225848-26225849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs547726875	chr9:26225867-26225868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs560015779	chr9:26225879-26225880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs533326797	chr9:26225903-26225904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs12004539	chr9:26225959-26225960	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs142466089	chr9:26225976-26225977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs188088685	chr9:26225991-26225992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs549941306	chr9:26225997-26225998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs745223	chr9:26226003-26226004	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs534759776	chr9:26226015-26226016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs192706885	chr9:26226018-26226019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs151296640	chr9:26226068-26226069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs183658918	chr9:26226069-26226070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs140574903	chr9:26226104-26226105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs557529069	chr9:26226118-26226119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs575875117	chr9:26226165-26226166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs201054808	chr9:26226166-26226167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188536267	chr9:26226213-26226214	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs150111529	chr9:26226215-26226216	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573920628	chr9:26226228-26226229	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs374136873	chr9:26226233-26226234	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs541429255	chr9:26226243-26226244	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:117)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:191 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26221800-26228200	Weak transcription	NHDF-Ad	bronchial
2	chr9:26226200-26227200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:26226400-26227200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:26228200-26228600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:26228200-26228600	Enhancers	HUVEC	blood vessel
6	chr9:26228200-26228800	Enhancers	NHDF-Ad	bronchial
7	chr9:26228600-26231000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:26228600-26237800	Weak transcription	HUVEC	blood vessel
9	chr9:26229400-26230200	Enhancers	Hela-S3	cervix
10	chr9:26231000-26231800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:26231000-26232400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:26231800-26234400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:26232000-26232400	Enhancers	Fetal Brain Male	brain
14	chr9:26232400-26234600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:26232400-26237400	Weak transcription	Fetal Brain Male	brain
16	chr9:26234400-26237800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:26234600-26235800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:26234800-26235200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:26235800-26237400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:26237400-26237600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:26237400-26238000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:26237400-26238000	Enhancers	Fetal Brain Male	brain
23	chr9:26237800-26239800	Enhancers	HUVEC	blood vessel
24	chr9:26237800-26242800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:26239800-26242600	Weak transcription	HUVEC	blood vessel
26	chr9:26240000-26240200	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr9:26240400-26241600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr9:26240400-26249400	Enhancers	Hela-S3	cervix
29	chr9:26241600-26242200	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr9:26242200-26242600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr9:26242600-26245000	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr9:26242600-26245000	Enhancers	HUVEC	blood vessel
33	chr9:26242800-26245400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:26243200-26243800	Enhancers	NH-A	brain
35	chr9:26243200-26244400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:26243200-26244400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:26243200-26244800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:26243200-26244800	Enhancers	A549	lung
39	chr9:26243200-26245800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:26243200-26248600	Enhancers	NHDF-Ad	bronchial
41	chr9:26243400-26245800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:26243800-26245600	Enhancers	Fetal Kidney	kidney
43	chr9:26244400-26245200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:26245200-26245400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:26245400-26247800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:26245800-26247400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:26245800-26248000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:26247400-26249000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:26247800-26248600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:26248000-26248600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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