Variant report

Variant	nsv893564
Chromosome Location	chr9:93074228-93116944
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:57914932..57916732-chr9:93116621..93119481,2	MCF-7	breast:
2	chr9:93080522..93081160-chr9:93309889..93310591,3	MCF-7	breast:
3	chr9:93080690..93081223-chr9:93404884..93405881,2	MCF-7	breast:
4	chr9:93080535..93081683-chr9:93405150..93405933,3	MCF-7	breast:
5	chr9:93080247..93081211-chr9:93633166..93633778,2	MCF-7	breast:
6	chr9:93101009..93103302-chr9:93104269..93106230,2	MCF-7	breast:
7	chr9:93080669..93081254-chr9:93407694..93408434,5	MCF-7	breast:
8	chr9:93102527..93105084-chr9:93106529..93108300,2	K562	blood:
9	chr9:93103277..93106203-chr9:93118468..93120864,2	MCF-7	breast:
10	chr9:93102527..93105084-chr9:93106529..93108300,2	K562	blood:
11	chr9:93101009..93103302-chr9:93104269..93106230,2	MCF-7	breast:
12	chr9:93067169..93069123-chr9:93074585..93076643,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYK-9	chr9:93093837-93093904	NONHSAT133000
2	lnc-SYK-9	chr9:93087618-93087758	NONHSAT133000

No data

Variant related genes	Relation type
ENSG00000165023	chromatin interactions
ENSG00000062716	chromatin interactions

Extended variants
information (count: 1384 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:1384 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1777011	chr9:93074228-93074229	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs570547740	chr9:93074232-93074233	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs549349047	chr9:93074264-93074265	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs34298673	chr9:93074293-93074294	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs148686023	chr9:93074296-93074297	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs184530864	chr9:93074316-93074317	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs141282572	chr9:93074362-93074363	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs554858579	chr9:93074363-93074364	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150770134	chr9:93074376-93074377	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs190597625	chr9:93074391-93074392	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs115062188	chr9:93074418-93074419	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs577255725	chr9:93074434-93074435	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs75220178	chr9:93074450-93074451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs552583185	chr9:93074455-93074456	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs562843373	chr9:93074495-93074496	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs193134462	chr9:93074510-93074511	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs542107733	chr9:93074523-93074524	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs561840515	chr9:93074596-93074597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs368015281	chr9:93074667-93074668	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs541369675	chr9:93074707-93074708	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs57671988	chr9:93074725-93074726	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs55985903	chr9:93074777-93074778	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs185198375	chr9:93074778-93074779	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs189024060	chr9:93074785-93074786	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs549485222	chr9:93074792-93074793	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs569272396	chr9:93074794-93074795	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs115791159	chr9:93074824-93074825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs548425841	chr9:93074830-93074831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs568656055	chr9:93074843-93074844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs75890441	chr9:93074846-93074847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs13302246	chr9:93074850-93074851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77578162	chr9:93074908-93074909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs557075568	chr9:93074911-93074912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs139252774	chr9:93074939-93074940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs372205733	chr9:93074978-93074979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556703950	chr9:93075010-93075011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs181079851	chr9:93075035-93075036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576961898	chr9:93075044-93075045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185513427	chr9:93075068-93075069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs573794473	chr9:93075183-93075184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs371780344	chr9:93075204-93075205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555773910	chr9:93075208-93075209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs144308380	chr9:93075229-93075230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs375853675	chr9:93075286-93075287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs563554306	chr9:93075291-93075292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs187973309	chr9:93075317-93075318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs563611133	chr9:93075318-93075319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs376815759	chr9:93075319-93075320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543070753	chr9:93075395-93075396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs563047298	chr9:93075462-93075463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Mental retardation	21693067	CNVD
Glioma	17123091	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:213 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93069600-93074800	Enhancers	Fetal Intestine Large	intestine
2	chr9:93070000-93081400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:93071600-93077800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93073400-93075800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:93075800-93076000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr9:93077800-93078200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:93078200-93081200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:93079400-93079800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:93079400-93080000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr9:93079400-93080000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:93079400-93080000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:93079400-93080000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:93079400-93080000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:93080000-93081400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:93081200-93081400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:93081400-93081600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:93081400-93081600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:93081400-93082000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:93081600-93090800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:93084400-93085600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:93084400-93085800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:93085600-93088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:93085800-93088400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:93086400-93093400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:93088200-93088600	Enhancers	NHLF	lung
26	chr9:93088200-93089000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:93088200-93089000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:93088400-93088600	Enhancers	NHDF-Ad	bronchial
29	chr9:93088400-93088800	Enhancers	HSMMtube	muscle
30	chr9:93088400-93089000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:93088400-93089000	Enhancers	Fetal Heart	heart
32	chr9:93088400-93089000	Enhancers	A549	lung
33	chr9:93088800-93094200	Weak transcription	HSMMtube	muscle
34	chr9:93089000-93089600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:93089000-93090200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:93089000-93092200	Weak transcription	Fetal Heart	heart
37	chr9:93089000-93094000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:93089600-93090000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:93090000-93093800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:93090200-93090800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:93090800-93091200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:93090800-93093400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:93090800-93094200	Weak transcription	NHDF-Ad	bronchial
44	chr9:93091200-93101400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:93092200-93092400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:93092200-93092600	Enhancers	Fetal Heart	heart
47	chr9:93092200-93093000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr9:93092400-93096200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:93092600-93093400	Weak transcription	Fetal Heart	heart
50	chr9:93093000-93093800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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