Variant report

Variant	nsv894111
Chromosome Location	chr9:136522985-136563926
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:374)
CpG islands
(count:489)
Chromatin interactive
region (count:51)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:374 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:136563925-136564017	K562	blood:	n/a	n/a
2	ARID3A	chr9:136523744-136523833	HepG2	liver:	n/a	n/a
3	BACH1	chr9:136523856-136524290	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr9:136534562-136534677	H1-hESC	embryonic stem cell:	n/a	n/a
5	BHLHE40	chr9:136557810-136558010	K562	blood:	n/a	chr9:136557867-136557888 chr9:136557872-136557881 chr9:136557871-136557884
6	CEBPB	chr9:136524014-136524140	Hela-S3	cervix:	n/a	chr9:136524109-136524120
7	CEBPB	chr9:136523948-136524147	HepG2	liver:	n/a	chr9:136524109-136524120
8	CEBPB	chr9:136551247-136551530	K562	blood:	n/a	n/a
9	CEBPB	chr9:136551294-136551490	Hela-S3	cervix:	n/a	n/a
10	CEBPB	chr9:136551248-136551498	HepG2	liver:	n/a	n/a
11	CEBPB	chr9:136551217-136551457	IMR90	lung:	n/a	n/a
12	CEBPB	chr9:136561795-136562031	IMR90	lung:	n/a	n/a
13	CEBPD	chr9:136523381-136524320	HepG2	liver:	n/a	n/a
14	CHD2	chr9:136523850-136524056	Hela-S3	cervix:	n/a	n/a
15	CHD2	chr9:136523633-136523998	HepG2	liver:	n/a	n/a
16	CTBP2	chr9:136534359-136535043	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr9:136529900-136530050	GM06990	blood:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
18	CTCF	chr9:136547816-136547962	Kidney_OC	kidney:	n/a	n/a
19	CTCF	chr9:136529900-136530050	HCT-116	colon:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
20	CTCF	chr9:136549120-136549270	AG04449	skin:	n/a	chr9:136549198-136549211
21	CTCF	chr9:136529882-136530092	MCF-7	breast:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
22	CTCF	chr9:136529820-136529970	HRPEpiC	eye:	n/a	chr9:136529939-136529947
23	CTCF	chr9:136529894-136530071	Gliobla	brain:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
24	CTCF	chr9:136529891-136529925	K562	blood:	n/a	n/a
25	CTCF	chr9:136529942-136529989	HepG2	liver:	n/a	chr9:136529963-136529976
26	CTCF	chr9:136549020-136549170	NHDF-neo	bronchial:	n/a	n/a
27	CTCF	chr9:136545400-136545550	K562	blood:	n/a	n/a
28	CTCF	chr9:136553200-136553350	WERI-Rb-1	eye:	n/a	chr9:136553334-136553347
29	CTCF	chr9:136535754-136535897	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr9:136529914-136530003	GM20000	blood:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
31	CTCF	chr9:136529881-136530076	GM19240	blood:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
32	CTCF	chr9:136549100-136549250	HCPEpiC	choroid plexus:	n/a	chr9:136549198-136549211
33	CTCF	chr9:136529860-136530010	RPTEC	kidney:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
34	CTCF	chr9:136529902-136530040	Hela-S3	cervix:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
35	CTCF	chr9:136545466-136545544	K562	blood:	n/a	n/a
36	CTCF	chr9:136529880-136530030	BE2_C	brain:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
37	CTCF	chr9:136529900-136530050	Caco-2	colon:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
38	CTCF	chr9:136529880-136530030	HVMF	connective:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
39	CTCF	chr9:136529921-136529986	LNCaP	prostate:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
40	CTCF	chr9:136530000-136530150	GM12868	blood:	n/a	n/a
41	CTCF	chr9:136529906-136530079	H1-hESC	embryonic stem cell:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
42	CTCF	chr9:136545400-136545550	WERI-Rb-1	eye:	n/a	n/a
43	CTCF	chr9:136549120-136549270	BJ	skin:	n/a	chr9:136549198-136549211
44	CTCF	chr9:136529889-136530006	SK-N-SH_RA	brain:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
45	CTCF	chr9:136529911-136530055	NHEK	skin:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
46	CTCF	chr9:136529880-136530030	GM12875	blood:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
47	CTCF	chr9:136523000-136523150	BE2_C	brain:	n/a	n/a
48	CTCF	chr9:136545460-136545610	HFF-Myc	foreskin:	n/a	n/a
49	CTCF	chr9:136529880-136530030	HBMEC	blood vessel:	n/a	chr9:136529963-136529976 chr9:136529939-136529947
50	CTCF	chr9:136529900-136530050	Hela-S3	cervix:	n/a	chr9:136529963-136529976 chr9:136529939-136529947

(count:489 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:136539392-136539442	ProgFib	skin:	n/a
2	chr9:136539392-136539442	ProgFib	skin:	n/a
3	chr9:136547862-136547912	AG09309	skin:	n/a
4	chr9:136556337-136556387	ovcar-3	ovarian:	n/a
5	chr9:136537981-136538031	HCF	heart:	n/a
6	chr9:136562840-136562890	NHDF-neo	bronchial:	n/a
7	chr9:136539392-136539442	HCF	heart:	n/a
8	chr9:136539392-136539442	HCT-116	colon:	n/a
9	chr9:136539392-136539442	AG04450	lung:	fetal
10	chr9:136556337-136556387	HPAEpiC	pulmonary alveolar:	n/a
11	chr9:136539392-136539442	CMK	blood:	n/a
12	chr9:136539392-136539442	HCPEpiC	choroid plexus:	n/a
13	chr9:136562840-136562890	HNPCEpiC	eye:	n/a
14	chr9:136537981-136538031	SAEC	small airway:	n/a
15	chr9:136562840-136562890	LNCaP	prostate:	n/a
16	chr9:136556337-136556387	A549	lung:	n/a
17	chr9:136539392-136539442	NB4	blood:	n/a
18	chr9:136545056-136545106	HEEpiC	esophagus:	n/a
19	chr9:136545056-136545106	HIPEpiC	eye:	n/a
20	chr9:136549086-136549136	HMEC	breast:	n/a
21	chr9:136545056-136545106	Caco-2	colon:	n/a
22	chr9:136538372-136538422	AoSMC	blood vessel:	n/a
23	chr9:136547862-136547912	Hepatocyte	liver:	n/a
24	chr9:136537981-136538031	AoSMC	blood vessel:	n/a
25	chr9:136549086-136549136	GM12891	blood:	n/a
26	chr9:136537981-136538031	GM12878	blood:	n/a
27	chr9:136537981-136538031	Jurkat	blood:	n/a
28	chr9:136539392-136539442	Caco-2	colon:	n/a
29	chr9:136562840-136562890	HL-60	blood:	n/a
30	chr9:136537981-136538031	ovcar-3	ovarian:	n/a
31	chr9:136537981-136538031	HEK293	kidney:	embryo
32	chr9:136549086-136549136	SK-N-SH	brain:	n/a
33	chr9:136556337-136556387	K562	blood:	n/a
34	chr9:136562840-136562890	A549	lung:	n/a
35	chr9:136547862-136547912	NHBE	bronchial:	n/a
36	chr9:136537981-136538031	SKMC	muscle:	n/a
37	chr9:136562840-136562890	MCF-7	breast:	n/a
38	chr9:136538372-136538422	AG09319	gingival:	n/a
39	chr9:136549086-136549136	Jurkat	blood:	n/a
40	chr9:136538372-136538422	Hepatocyte	liver:	n/a
41	chr9:136538372-136538422	HCF	heart:	n/a
42	chr9:136539392-136539442	U87	brain:	n/a
43	chr9:136556337-136556387	GM19239	blood:	n/a
44	chr9:136562840-136562890	H1-hESC	embryonic stem cell:	embryo
45	chr9:136556337-136556387	CMK	blood:	n/a
46	chr9:136556337-136556387	SK-N-MC	brain:	n/a
47	chr9:136538372-136538422	ovcar-3	ovarian:	n/a
48	chr9:136538372-136538422	HEK293	kidney:	embryo
49	chr9:136549086-136549136	SK-N-SH_RA	brain:	n/a
50	chr9:136556337-136556387	SK-N-SH_RA	brain:	n/a

(count:51 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr9:136546579..136549426-chr9:136551457..136554920,3	K562	blood:
2	chr9:136492846..136495441-chr9:136522709..136525633,2	MCF-7	breast:
3	chr9:136541535..136544211-chr9:136557001..136558713,2	K562	blood:
4	chr9:136558023..136560608-chr9:136564719..136567845,3	MCF-7	breast:
5	chr9:136547327..136548989-chr9:136894094..136896056,2	MCF-7	breast:
6	chr9:136528592..136530737-chr9:136533318..136534835,2	K562	blood:
7	chr9:136562168..136564427-chr9:136565551..136567295,2	K562	blood:
8	chr9:136551308..136553495-chr9:136555046..136558031,3	MCF-7	breast:
9	chr9:136518974..136520647-chr9:136523004..136525968,2	K562	blood:
10	chr9:136528562..136531390-chr9:136533335..136537164,3	K562	blood:
11	chr9:136528532..136530062-chr9:136535645..136537164,2	K562	blood:
12	chr9:136549300..136551491-chr9:136553911..136555708,2	K562	blood:
13	chr9:136545056..136547450-chr9:136550910..136552726,2	K562	blood:
14	chr9:136547609..136549609-chr9:136554134..136556211,2	MCF-7	breast:
15	chr9:136531219..136533253-chr9:136536385..136539171,2	K562	blood:
16	chr9:136551308..136553495-chr9:136555046..136558031,3	MCF-7	breast:
17	chr9:136420115..136422179-chr9:136562100..136563900,2	MCF-7	breast:
18	chr9:136528562..136531390-chr9:136533335..136537164,3	K562	blood:
19	chr9:136560902..136563128-chr9:136576018..136578776,2	MCF-7	breast:
20	chr9:136397976..136398826-chr9:136528405..136529390,2	MCF-7	breast:
21	chr9:136539587..136542544-chr9:136554397..136556598,2	MCF-7	breast:
22	chr9:136562276..136565149-chr9:136581460..136583950,2	MCF-7	breast:
23	chr9:136553976..136556938-chr9:136571128..136573086,2	MCF-7	breast:
24	chr9:136533491..136538951-chr9:136540367..136544630,5	MCF-7	breast:
25	chr9:136547609..136549609-chr9:136554134..136556211,2	MCF-7	breast:
26	chr9:136546579..136549426-chr9:136551457..136554920,3	K562	blood:
27	chr9:136539587..136542544-chr9:136554397..136556598,2	MCF-7	breast:
28	chr9:136531862..136534344-chr9:136553283..136554796,2	K562	blood:
29	chr9:136545056..136547450-chr9:136550910..136552726,2	K562	blood:
30	chr9:136533491..136538951-chr9:136540367..136544630,5	MCF-7	breast:
31	chr9:136524956..136527895-chr9:136529322..136531931,3	MCF-7	breast:
32	chr9:136523144..136526065-chr9:136527921..136530216,2	MCF-7	breast:
33	chr9:136514960..136517246-chr9:136545398..136548011,2	K562	blood:
34	chr9:136549300..136551491-chr9:136553911..136555708,2	K562	blood:
35	chr9:136556489..136558847-chr9:136922082..136923657,2	K562	blood:
36	chr9:136528592..136530737-chr9:136533318..136534835,2	K562	blood:
37	chr9:136406344..136408415-chr9:136524304..136526688,2	MCF-7	breast:
38	chr9:136541535..136543901-chr9:136557001..136558944,2	K562	blood:
39	chr9:136510698..136512936-chr9:136554635..136557267,2	MCF-7	breast:
40	chr9:136524956..136527895-chr9:136529322..136531931,3	MCF-7	breast:
41	chr22:50714348..50715426-chr9:136539069..136540069,7	MCF-7	breast:
42	chr9:136541535..136543901-chr9:136557001..136558944,2	K562	blood:
43	chr9:136557848..136559965-chr9:136568291..136571080,2	K562	blood:
44	chr9:136536158..136538637-chr9:136540445..136542494,2	K562	blood:
45	chr9:136556867..136559389-chr9:136579580..136582803,3	MCF-7	breast:
46	chr9:136518974..136521399-chr9:136523004..136525968,3	K562	blood:
47	chr9:136528532..136530062-chr9:136535645..136537164,2	K562	blood:
48	chr9:136520134..136522462-chr9:136523738..136526239,2	MCF-7	breast:
49	chr9:136523144..136526065-chr9:136527921..136530216,2	MCF-7	breast:
50	chr9:136541535..136544211-chr9:136557001..136558713,2	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SARDH-1	chr9:136522216-136525145	NONHSAT135332
2	lnc-VAV2-4	chr9:136552132-136552287	NONHSAT135336
3	lnc-DBH-3	chr9:136548433-136550559	NONHSAT135337
4	lnc-VAV2-4	chr9:136537139-136537213	NONHSAT135336
5	lnc-VAV2-3	chr9:136558849-136558951	NONHSAT135338
6	lnc-SARDH-1	chr9:136522249-136524916	NONHSAT135333
7	lnc-VAV2-4	chr9:136552891-136553109	NONHSAT135336
8	lnc-FAM163B-2	chr9:136529094-136529136	NONHSAT135335
9	lnc-FAM163B-2	chr9:136531857-136532245	NONHSAT135335

No data

Variant related genes	Relation type
DBH-AS1	TF binding region
SARDH	TF binding region
DBH-AS1	CpG island
SARDH	CpG island
ENSG00000123453	chromatin interactions
ENSG00000235106	chromatin interactions
ENSG00000225756	chromatin interactions

Extended variants
information (count: 2167 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:2167 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10993949	chr9:136522985-136522986	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs182866013	chr9:136522986-136522987	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs138842215	chr9:136523009-136523010	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
4	rs372185493	chr9:136523052-136523053	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs142572061	chr9:136523053-136523054	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs377472344	chr9:136523056-136523057	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs35903448	chr9:136523124-136523125	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs550085746	chr9:136523132-136523133	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs3025424	chr9:136523146-136523147	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs3025425	chr9:136523166-136523167	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs187899122	chr9:136523190-136523191	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
12	rs193234159	chr9:136523201-136523202	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
13	rs572004993	chr9:136523202-136523203	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
14	rs145990442	chr9:136523219-136523220	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs557511415	chr9:136523358-136523359	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs199796699	chr9:136523379-136523380	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs45532735	chr9:136523397-136523398	Weak transcription Bivalent Enhancer Enhancers	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs141377669	chr9:136523400-136523401	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
19	rs376463694	chr9:136523426-136523427	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs562020837	chr9:136523438-136523439	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs77724989	chr9:136523445-136523446	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs45446891	chr9:136523449-136523450	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs61733931	chr9:136523450-136523451	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs185448265	chr9:136523469-136523470	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs75512464	chr9:136523487-136523488	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs374885676	chr9:136523488-136523489	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs551844036	chr9:136523493-136523494	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs61729385	chr9:136523503-136523504	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs147292866	chr9:136523520-136523521	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs148806316	chr9:136523534-136523535	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs200009180	chr9:136523538-136523539	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs550120044	chr9:136523539-136523540	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs141570582	chr9:136523540-136523541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs568326839	chr9:136523546-136523547	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs369241353	chr9:136523547-136523548	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs372197370	chr9:136523550-136523551	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs76316834	chr9:136523555-136523556	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
38	rs80165750	chr9:136523572-136523573	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs373443650	chr9:136523575-136523576	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs535655680	chr9:136523590-136523591	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs532306754	chr9:136523616-136523617	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs531831034	chr9:136523621-136523622	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs45455601	chr9:136523627-136523628	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs565861335	chr9:136523634-136523635	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs189524010	chr9:136523645-136523646	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
46	rs45602440	chr9:136523658-136523659	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs147588748	chr9:136523663-136523664	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs536617820	chr9:136523665-136523666	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs555651745	chr9:136523668-136523669	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs129882	chr9:136523669-136523670	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Melanoma	18172304	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Kleefstra Syndrome	21538692	CNVD
Disorders of sex development	22290220	CNVD
Cancer	21183584	CNVD
Chronic myelomonocytic leukemia	16760666	CNVD
Abnormal phenotypes	18644119	CNVD
Ovarian cancer	21720365	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21364760	CNVD
Cancer	20581869	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21509527	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Hepatocellular carcinoma	22174799	CNVD
Bladder cancer	21909424	CNVD
Cancer	17160897	CNVD
Ependymoma	20639864	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	20932292	CNVD
T-cell lymphomas	22341440	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1024 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136515000-136523400	Weak transcription	Spleen	Spleen
2	chr9:136520200-136524200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr9:136520400-136523600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:136520400-136525800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:136520600-136523000	Weak transcription	Right Atrium	heart
6	chr9:136520800-136523400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:136521000-136526600	Enhancers	Liver	Liver
8	chr9:136521200-136523000	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr9:136521200-136523400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:136521200-136523800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr9:136521400-136523000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:136521400-136523000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:136521400-136525200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr9:136521800-136525200	Bivalent Enhancer	Fetal Brain Male	brain
15	chr9:136522000-136523600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr9:136522000-136525200	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr9:136522200-136523400	Enhancers	HepG2	liver
18	chr9:136522200-136523600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
19	chr9:136522200-136523600	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:136522200-136524400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr9:136522200-136524400	Enhancers	Ovary	ovary
22	chr9:136522400-136523400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:136522400-136523400	Weak transcription	Gastric	stomach
24	chr9:136522400-136523400	Weak transcription	Pancreas	Pancrea
25	chr9:136522400-136525400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr9:136522400-136526000	Bivalent Enhancer	Fetal Thymus	thymus
27	chr9:136522600-136523400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr9:136522600-136523600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:136522600-136523600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr9:136522800-136523600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr9:136522800-136523600	Enhancers	Brain Anterior Caudate	brain
32	chr9:136522800-136523600	Bivalent Enhancer	Brain Germinal Matrix	brain
33	chr9:136522800-136523600	Bivalent Enhancer	Fetal Brain Female	brain
34	chr9:136522800-136523600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
35	chr9:136522800-136523600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
36	chr9:136522800-136523800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:136522800-136523800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
38	chr9:136522800-136523800	Bivalent Enhancer	Fetal Lung	lung
39	chr9:136522800-136525000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:136523000-136523400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr9:136523000-136523600	Enhancers	Brain Angular Gyrus	brain
42	chr9:136523000-136523600	Enhancers	Right Atrium	heart
43	chr9:136523000-136524000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
44	chr9:136523000-136524600	Bivalent Enhancer	Fetal Stomach	stomach
45	chr9:136523000-136525200	Bivalent Enhancer	Placenta	Placenta
46	chr9:136523000-136525400	Enhancers	Primary T cells from cord blood	blood
47	chr9:136523200-136523400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
48	chr9:136523200-136523600	Bivalent Enhancer	Colonic Mucosa	Colon
49	chr9:136523200-136523600	Bivalent Enhancer	A549	lung
50	chr9:136523200-136523800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain

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