Variant report

Variant	nsv894505
Chromosome Location	chr9:139831696-139848717
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2159)
CpG islands
(count:1772)
Chromatin interactive
region (count:126)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2159 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:139844800-139844903	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:139839075-139839364	K562	blood:	n/a	n/a
3	ARID3A	chr9:139844336-139844495	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:139843540-139843794	HepG2	liver:	n/a	n/a
5	ARID3A	chr9:139839043-139839584	HepG2	liver:	n/a	n/a
6	ATF1	chr9:139839002-139839680	K562	blood:	n/a	n/a
7	ATF2	chr9:139838950-139839618	GM12878	blood:	n/a	n/a
8	ATF2	chr9:139839036-139839575	GM12878	blood:	n/a	n/a
9	ATF3	chr9:139839047-139839690	A549	lung:	n/a	chr9:139839433-139839446
10	ATF3	chr9:139844339-139844757	H1-hESC	embryonic stem cell:	n/a	chr9:139844580-139844600 chr9:139844591-139844611
11	ATF3	chr9:139844344-139844705	HepG2	liver:	n/a	chr9:139844580-139844600 chr9:139844591-139844611
12	ATF3	chr9:139844440-139844816	H1-hESC	embryonic stem cell:	n/a	chr9:139844580-139844600 chr9:139844591-139844611
13	ATF3	chr9:139838643-139838833	K562	blood:	n/a	chr9:139838747-139838761 chr9:139838747-139838767
14	ATF3	chr9:139844406-139844730	K562	blood:	n/a	chr9:139844580-139844600 chr9:139844591-139844611
15	ATF3	chr9:139839063-139839401	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF3	chr9:139839043-139839521	A549	lung:	n/a	chr9:139839433-139839446
17	ATF3	chr9:139844421-139844661	GM12878	blood:	n/a	chr9:139844580-139844600 chr9:139844591-139844611
18	ATF3	chr9:139844349-139844811	GM12878	blood:	n/a	chr9:139844580-139844600 chr9:139844591-139844611
19	BACH1	chr9:139844646-139844879	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr9:139838954-139839457	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr9:139838461-139838708	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr9:139839195-139839667	K562	blood:	n/a	n/a
23	BACH1	chr9:139844794-139844800	K562	blood:	n/a	n/a
24	BACH1	chr9:139842522-139842838	H1-hESC	embryonic stem cell:	n/a	n/a
25	BACH1	chr9:139844049-139844284	H1-hESC	embryonic stem cell:	n/a	n/a
26	BCL3	chr9:139842227-139842820	A549	lung:	n/a	n/a
27	BCL3	chr9:139834393-139835045	A549	lung:	n/a	n/a
28	BCL3	chr9:139839061-139839649	A549	lung:	n/a	chr9:139839304-139839312 chr9:139839319-139839332
29	BCL3	chr9:139837806-139838756	A549	lung:	n/a	n/a
30	BCL3	chr9:139839056-139839675	A549	lung:	n/a	chr9:139839304-139839312 chr9:139839319-139839332
31	BCL3	chr9:139834267-139835144	A549	lung:	n/a	n/a
32	BCL3	chr9:139838825-139839336	GM12878	blood:	n/a	chr9:139838926-139838939 chr9:139839304-139839312 chr9:139839319-139839332
33	BCL3	chr9:139842480-139843026	A549	lung:	n/a	n/a
34	BCL3	chr9:139833584-139834095	A549	lung:	n/a	n/a
35	BCL3	chr9:139838187-139838758	A549	lung:	n/a	n/a
36	BCLAF1	chr9:139838954-139839506	GM12878	blood:	n/a	chr9:139839304-139839312 chr9:139839319-139839332
37	BCLAF1	chr9:139838402-139839433	GM12878	blood:	n/a	chr9:139838765-139838778 chr9:139838772-139838785 chr9:139838926-139838939 chr9:139839304-139839312 chr9:139839319-139839332
38	BHLHE40	chr9:139844223-139845013	K562	blood:	n/a	chr9:139844591-139844600 chr9:139844633-139844649 chr9:139844590-139844599 chr9:139844585-139844606 chr9:139844592-139844601 chr9:139844591-139844600 chr9:139844733-139844749 chr9:139844589-139844602
39	BHLHE40	chr9:139838735-139839795	HepG2	liver:	n/a	chr9:139838757-139838773 chr9:139838768-139838784
40	BHLHE40	chr9:139838637-139839625	K562	blood:	n/a	chr9:139838757-139838773 chr9:139838768-139838784
41	BHLHE40	chr9:139842512-139842731	GM12878	blood:	n/a	n/a
42	BHLHE40	chr9:139844194-139844816	GM12878	blood:	n/a	chr9:139844591-139844600 chr9:139844633-139844649 chr9:139844590-139844599 chr9:139844585-139844606 chr9:139844592-139844601 chr9:139844591-139844600 chr9:139844733-139844749 chr9:139844589-139844602
43	BHLHE40	chr9:139844201-139844860	HepG2	liver:	n/a	chr9:139844591-139844600 chr9:139844633-139844649 chr9:139844590-139844599 chr9:139844585-139844606 chr9:139844592-139844601 chr9:139844591-139844600 chr9:139844733-139844749 chr9:139844589-139844602
44	BHLHE40	chr9:139838624-139839532	GM12878	blood:	n/a	chr9:139838757-139838773 chr9:139838768-139838784
45	BHLHE40	chr9:139842508-139842849	K562	blood:	n/a	n/a
46	BRCA1	chr9:139844533-139844602	H1-hESC	embryonic stem cell:	n/a	n/a
47	BRCA1	chr9:139844800-139844912	HepG2	liver:	n/a	n/a
48	BRCA1	chr9:139838505-139838723	Hela-S3	cervix:	n/a	n/a
49	BRCA1	chr9:139839126-139839587	Hela-S3	cervix:	n/a	n/a
50	BRCA1	chr9:139844354-139844872	Hela-S3	cervix:	n/a	n/a

(count:1772 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139835353-139835403	AG10803	skin:	n/a
2	chr9:139837659-139837709	HEEpiC	esophagus:	n/a
3	chr9:139847314-139847364	Jurkat	blood:	n/a
4	chr9:139835353-139835403	AG10803	skin:	n/a
5	chr9:139837659-139837709	HEEpiC	esophagus:	n/a
6	chr9:139847314-139847364	Jurkat	blood:	n/a
7	chr9:139831796-139831846	BJ	skin:	n/a
8	chr9:139837757-139837807	NHDF-neo	bronchial:	n/a
9	chr9:139840432-139840482	SK-N-MC	brain:	n/a
10	chr9:139839439-139839489	GM12878	blood:	n/a
11	chr9:139837659-139837709	Caco-2	colon:	n/a
12	chr9:139838518-139838568	GM12891	blood:	n/a
13	chr9:139834199-139834249	AG09309	skin:	n/a
14	chr9:139838089-139838139	MCF-7	breast:	n/a
15	chr9:139846100-139846150	AG04450	lung:	fetal
16	chr9:139844462-139844512	AG04450	lung:	fetal
17	chr9:139837659-139837709	IMR90	lung:	fetal
18	chr9:139837659-139837709	AG04450	lung:	fetal
19	chr9:139836443-139836493	SKMC	muscle:	n/a
20	chr9:139835553-139835603	AG09309	skin:	n/a
21	chr9:139839439-139839489	HEK293	kidney:	embryo
22	chr9:139840678-139840728	HIPEpiC	eye:	n/a
23	chr9:139839439-139839489	HAEpiC	amniotic membrane:	n/a
24	chr9:139835553-139835603	U87	brain:	n/a
25	chr9:139838518-139838568	HEK293	kidney:	embryo
26	chr9:139840678-139840728	T-47D	breast:	n/a
27	chr9:139844321-139844371	GM06990	blood:	n/a
28	chr9:139840678-139840728	HMEC	breast:	n/a
29	chr9:139835122-139835172	GM12878	blood:	n/a
30	chr9:139840432-139840482	NHBE	bronchial:	n/a
31	chr9:139839363-139839413	HCF	heart:	n/a
32	chr9:139839363-139839413	NHBE	bronchial:	n/a
33	chr9:139844321-139844371	AG04450	lung:	fetal
34	chr9:139835353-139835403	SK-N-SH_RA	brain:	n/a
35	chr9:139844321-139844371	SK-N-SH_RA	brain:	n/a
36	chr9:139836443-139836493	Hela-S3	cervix:	n/a
37	chr9:139846100-139846150	BJ	skin:	n/a
38	chr9:139838381-139838431	SAEC	small airway:	n/a
39	chr9:139836884-139836934	IMR90	lung:	fetal
40	chr9:139843753-139843803	HEK293	kidney:	embryo
41	chr9:139839439-139839489	Hepatocyte	liver:	n/a
42	chr9:139847314-139847364	LNCaP	prostate:	n/a
43	chr9:139839439-139839489	Jurkat	blood:	n/a
44	chr9:139836978-139837028	AG04449	skin:	fetal
45	chr9:139839439-139839489	HCT-116	colon:	n/a
46	chr9:139836323-139836373	HL-60	blood:	n/a
47	chr9:139836884-139836934	MCF10A-Er-Src	breast:	n/a
48	chr9:139836443-139836493	IMR90	lung:	fetal
49	chr9:139836443-139836493	Jurkat	blood:	n/a
50	chr9:139837757-139837807	HEEpiC	esophagus:	n/a

(count:126 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:139700428..139703391-chr9:139838721..139840265,2	K562	blood:
2	chr12:52540641..52541398-chr9:139844027..139844810,2	Hela-S3	cervix:
3	chr9:139758319..139759989-chr9:139844595..139846136,2	K562	blood:
4	chr9:139841697..139844143-chr9:139891136..139894230,3	K562	blood:
5	chr9:139836429..139841703-chr9:139845168..139848601,5	K562	blood:
6	chr9:139837701..139840548-chr9:140135499..140137086,2	K562	blood:
7	chr9:139791042..139798100-chr9:139837150..139840881,10	MCF-7	breast:
8	chr9:139795947..139797778-chr9:139847021..139848590,2	MCF-7	breast:
9	chr9:139833776..139836708-chr9:139890446..139893383,3	K562	blood:
10	chr9:139837304..139841351-chr9:139889068..139893319,4	K562	blood:
11	chr9:139750899..139754581-chr9:139837670..139840574,3	K562	blood:
12	chr9:139759084..139762257-chr9:139836822..139839684,5	MCF-7	breast:
13	chr9:139581042..139582796-chr9:139835753..139837526,2	K562	blood:
14	chr9:139741905..139745759-chr9:139836394..139841074,11	K562	blood:
15	chr9:139842911..139846043-chr9:139877462..139880780,4	MCF-7	breast:
16	chr9:139699496..139701680-chr9:139843463..139845874,2	MCF-7	breast:
17	chr9:139837381..139841533-chr9:139948424..139951873,5	MCF-7	breast:
18	chr9:139684995..139687739-chr9:139832629..139834715,2	MCF-7	breast:
19	chr9:139837721..139840687-chr9:139929807..139932623,3	K562	blood:
20	chr9:139843021..139845836-chr9:139846843..139848545,2	K562	blood:
21	chr9:139790926..139800327-chr9:139835284..139840384,15	MCF-7	breast:
22	chr9:139734155..139746957-chr9:139834710..139842618,30	MCF-7	breast:
23	chr9:139834936..139840862-chr9:139842314..139844588,8	K562	blood:
24	chr9:139835507..139852162-chr9:139884980..139895056,54	MCF-7	breast:
25	chr9:139836429..139841703-chr9:139845168..139848601,5	K562	blood:
26	chr9:139795540..139797953-chr9:139837525..139839445,2	K562	blood:
27	chr9:139835527..139839374-chr9:139921629..139923901,3	K562	blood:
28	chr9:139775744..139785357-chr9:139834831..139843301,18	MCF-7	breast:
29	chr16:4303473..4304037-chr9:139843962..139844536,2	Hela-S3	cervix:
30	chr9:139837344..139842228-chr9:139920048..139923537,8	MCF-7	breast:
31	chr9:139833070..139835457-chr9:139886709..139888900,2	MCF-7	breast:
32	chr9:139838060..139839792-chr9:139933494..139936101,2	K562	blood:
33	chr17:66315085..66315989-chr9:139844633..139845280,2	MCF-7	breast:
34	chr9:139738593..139754524-chr9:139832961..139844322,29	MCF-7	breast:
35	chr9:139835281..139842012-chr9:139842308..139848601,13	K562	blood:
36	chr9:139836491..139840843-chr9:139920877..139924515,5	K562	blood:
37	chr9:139693946..139696412-chr9:139837161..139840313,3	MCF-7	breast:
38	chr9:139834936..139840862-chr9:139842314..139844588,8	K562	blood:
39	chr9:139758990..139764783-chr9:139834742..139840758,9	MCF-7	breast:
40	chr17:41465225..41466104-chr9:139844451..139845202,2	Hela-S3	cervix:
41	chr9:139778379..139782493-chr9:139835538..139841683,7	K562	blood:
42	chr9:139745227..139747649-chr9:139830491..139832594,2	MCF-7	breast:
43	chr9:139794855..139797359-chr9:139840971..139842625,2	MCF-7	breast:
44	chr9:139837844..139839533-chr9:139872878..139875055,2	MCF-7	breast:
45	chr9:139760778..139763207-chr9:139834767..139836838,2	K562	blood:
46	chr9:139701846..139704176-chr9:139836985..139838880,3	MCF-7	breast:
47	chr9:139728528..139730421-chr9:139837681..139839242,2	K562	blood:
48	chr9:139836818..139839181-chr9:139906279..139908196,2	K562	blood:
49	chr9:139837779..139839326-chr9:139906684..139908515,2	MCF-7	breast:
50	chr9:139755063..139757195-chr9:139834664..139836804,2	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LCN12-1	chr9:139846772-139846893	NONHSAT135628
2	lnc-FBXW5-1	chr9:139831621-139832440	ENSG00000260190.1
3	lnc-LCN12-1	chr9:139845727-139846154	NONHSAT135627
4	lnc-LCN12-1	chr9:139848376-139848416	NONHSAT135633
5	lnc-LCN12-1	chr9:139848606-139848707	NONHSAT135633
6	lnc-LCN12-1	chr9:139848086-139848707	NONHSAT135634
7	lnc-LCN12-1	chr9:139844674-139844727	NONHSAT135627
8	lnc-LCN12-1	chr9:139848069-139848231	NONHSAT135633

No data

Variant related genes	Relation type
LCN12	TF binding region
ENSG00000260190	TF binding region
FBXW5	TF binding region
C8G	TF binding region
LCN12	CpG island
ENSG00000260190	CpG island
FBXW5	CpG island
C8G	CpG island
ENSG00000159069	chromatin interactions
ENSG00000196642	chromatin interactions
ENSG00000177943	chromatin interactions
ENSG00000107317	chromatin interactions
ENSG00000258838	chromatin interactions
ENSG00000214402	chromatin interactions
ENSG00000127191	chromatin interactions
ENSG00000272679	chromatin interactions
ENSG00000233016	chromatin interactions
ENSG00000107223	chromatin interactions
ENSG00000181481	chromatin interactions
ENSG00000148362	chromatin interactions
ENSG00000054148	chromatin interactions
ENSG00000107331	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000238268	chromatin interactions
ENSG00000244187	chromatin interactions
ENSG00000212864	chromatin interactions
ENSG00000184709	chromatin interactions
ENSG00000199568	chromatin interactions
ENSG00000169583	chromatin interactions
ENSG00000180539	chromatin interactions
ENSG00000272896	chromatin interactions
ENSG00000177984	chromatin interactions
ENSG00000184925	chromatin interactions
ENSG00000266507	chromatin interactions
ENSG00000169692	chromatin interactions
ENSG00000103260	chromatin interactions
ENSG00000176884	chromatin interactions
ENSG00000197191	chromatin interactions
ENSG00000180549	chromatin interactions
ENSG00000228544	chromatin interactions
ENSG00000198454	chromatin interactions
ENSG00000232434	chromatin interactions
ENSG00000235117	chromatin interactions
ENSG00000262468	chromatin interactions
ENSG00000225830	chromatin interactions
ENSG00000273066	chromatin interactions
ENSG00000263697	chromatin interactions
ENSG00000054179	chromatin interactions
ENSG00000188229	chromatin interactions
ENSG00000213213	chromatin interactions
ENSG00000176919	chromatin interactions
ENSG00000107281	chromatin interactions

Extended variants
information (count: 1245 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:1245 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10116414	chr9:139831696-139831697	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs556396690	chr9:139831697-139831698	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
3	rs146703473	chr9:139831701-139831702	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
4	rs564083156	chr9:139831705-139831706	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
5	rs34338126	chr9:139831740-139831741	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
6	rs116915239	chr9:139831744-139831745	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
7	rs533151642	chr9:139831759-139831760	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
8	rs546421814	chr9:139831763-139831764	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
9	rs368995776	chr9:139831799-139831800	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
10	rs117244180	chr9:139831863-139831864	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
11	rs373045509	chr9:139831959-139831960	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
12	rs566222690	chr9:139831974-139831975	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
13	rs11788087	chr9:139831980-139831981	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs541110296	chr9:139831988-139831989	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
15	rs10118333	chr9:139832005-139832006	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs577786577	chr9:139832011-139832012	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
17	rs543761730	chr9:139832072-139832073	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
18	rs76752073	chr9:139832158-139832159	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
19	rs574243758	chr9:139832160-139832161	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
20	rs541857488	chr9:139832192-139832193	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
21	rs1879013	chr9:139832222-139832223	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
22	rs548972325	chr9:139832301-139832302	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
23	rs571921503	chr9:139832302-139832303	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
24	rs527419931	chr9:139832304-139832305	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
25	rs34831804	chr9:139832343-139832344	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
26	rs547483894	chr9:139832371-139832372	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
27	rs77605544	chr9:139832393-139832394	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
28	rs140274206	chr9:139832421-139832422	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
29	rs549698519	chr9:139832492-139832493	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs537376190	chr9:139832501-139832502	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs569979407	chr9:139832508-139832509	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs143996701	chr9:139832511-139832512	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs75955943	chr9:139832514-139832515	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs565702764	chr9:139832528-139832529	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs534813505	chr9:139832575-139832576	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs74871800	chr9:139832587-139832588	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs578116048	chr9:139832593-139832594	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs141099159	chr9:139832747-139832748	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs557662888	chr9:139832781-139832782	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs557270215	chr9:139832785-139832786	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs7042134	chr9:139832789-139832790	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs543328782	chr9:139832831-139832832	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs150283130	chr9:139832834-139832835	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs7036179	chr9:139832845-139832846	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs541133006	chr9:139832849-139832850	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs538347751	chr9:139832855-139832856	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs3034871	chr9:139832875-139832876	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs564131751	chr9:139832876-139832877	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs532881794	chr9:139832909-139832910	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs546271646	chr9:139832944-139832945	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17603634	CNVD
Oral cancer	21386901	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Melanoma	18172304	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Kleefstra Syndrome	21538692	CNVD
Disorders of sex development	22290220	CNVD
Cancer	21183584	CNVD
Chronic myelomonocytic leukemia	16760666	CNVD
Abnormal phenotypes	18644119	CNVD
Ovarian cancer	21720365	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Hepatocellular carcinoma	22174799	CNVD
Idiopathic chronic pancreatitis	21572526	CNVD
Kleefstra syndrome	22670141	CNVD
Schizophrenia	22241247	CNVD
9q deletion syndrome	16826528	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Non-small cell lung cancer	21829676	CNVD
Non-syndromic sensorineural hearing loss	19293338	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Mantle cell lymphoma	19029149	CNVD
Autism	20808228	CNVD
Epilepsy	22083797	CNVD
Cancer	20164920	CNVD
Breast cancer	21509527	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Autism	22495309	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1676 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139782200-139835800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:139782200-139837000	Weak transcription	Fetal Brain Male	brain
3	chr9:139797800-139837400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:139810400-139834400	Weak transcription	HSMM	muscle
5	chr9:139815000-139838200	Weak transcription	Fetal Kidney	kidney
6	chr9:139815400-139835000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:139815600-139832400	Weak transcription	Fetal Lung	lung
8	chr9:139815800-139837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:139816000-139835000	Weak transcription	Small Intestine	intestine
10	chr9:139817000-139834600	Weak transcription	HMEC	breast
11	chr9:139817000-139835000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr9:139817000-139838000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:139820800-139832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:139820800-139834400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:139821000-139832400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:139821000-139833800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:139821200-139833600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr9:139821200-139835800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:139821400-139832200	Weak transcription	Brain Anterior Caudate	brain
20	chr9:139821400-139833600	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:139821400-139833800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:139821400-139834200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:139821400-139834600	Weak transcription	Ovary	ovary
24	chr9:139821800-139831800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:139821800-139833400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:139821800-139833600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:139822000-139832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:139822000-139833600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr9:139822000-139834000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:139822000-139834200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr9:139822000-139834400	Weak transcription	Brain Substantia Nigra	brain
32	chr9:139822200-139832000	Weak transcription	Aorta	Aorta
33	chr9:139822200-139832200	Weak transcription	Pancreas	Pancrea
34	chr9:139822200-139833600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr9:139822200-139833800	Weak transcription	Primary B cells from cord blood	blood
36	chr9:139822400-139834200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr9:139822400-139834600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:139822600-139831800	Weak transcription	Liver	Liver
39	chr9:139822600-139832400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr9:139822600-139833600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr9:139822600-139833800	Weak transcription	Gastric	stomach
42	chr9:139822600-139834000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr9:139822600-139837200	Weak transcription	NH-A	brain
44	chr9:139822600-139837400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:139822800-139831800	Weak transcription	Fetal Muscle Leg	muscle
46	chr9:139822800-139833600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr9:139823000-139833800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr9:139823000-139834600	Weak transcription	NHDF-Ad	bronchial
49	chr9:139823200-139831800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:139823200-139832000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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