Variant report

Variant	nsv894673
Chromosome Location	chr9:140507688-140518576
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1226)
CpG islands
(count:552)
Chromatin interactive
region (count:41)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1226 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:140514701-140514718	K562	blood:	n/a	n/a
2	ARID3A	chr9:140512995-140513194	K562	blood:	n/a	n/a
3	ATF1	chr9:140512908-140513272	K562	blood:	n/a	n/a
4	ATF2	chr9:140512846-140513342	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr9:140513019-140513356	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr9:140512882-140513291	GM12878	blood:	n/a	n/a
7	ATF2	chr9:140512599-140513361	GM12878	blood:	n/a	n/a
8	ATF3	chr9:140512666-140513485	A549	lung:	n/a	chr9:140513400-140513409
9	ATF3	chr9:140513171-140513459	H1-hESC	embryonic stem cell:	n/a	chr9:140513400-140513409
10	ATF3	chr9:140513263-140513470	GM12878	blood:	n/a	chr9:140513400-140513409
11	ATF3	chr9:140512941-140513477	K562	blood:	n/a	chr9:140513400-140513409
12	ATF3	chr9:140513192-140513485	HepG2	liver:	n/a	chr9:140513400-140513409
13	ATF3	chr9:140513089-140513438	A549	lung:	n/a	chr9:140513400-140513409
14	ATF3	chr9:140513079-140513492	K562	blood:	n/a	chr9:140513400-140513409
15	BACH1	chr9:140512354-140512455	K562	blood:	n/a	n/a
16	BCL3	chr9:140512082-140513429	A549	lung:	n/a	n/a
17	BCL3	chr9:140505934-140508793	A549	lung:	n/a	n/a
18	BCL3	chr9:140506032-140508286	A549	lung:	n/a	n/a
19	BCL3	chr9:140512432-140513462	GM12878	blood:	n/a	n/a
20	BCL3	chr9:140512554-140513408	A549	lung:	n/a	n/a
21	BCLAF1	chr9:140512590-140513424	GM12878	blood:	n/a	n/a
22	BHLHE40	chr9:140513027-140513435	HepG2	liver:	n/a	n/a
23	BHLHE40	chr9:140512827-140513435	GM12878	blood:	n/a	n/a
24	BHLHE40	chr9:140513901-140514002	GM12878	blood:	n/a	n/a
25	BHLHE40	chr9:140512971-140513406	K562	blood:	n/a	n/a
26	BRCA1	chr9:140512436-140512563	Hela-S3	cervix:	n/a	n/a
27	BRCA1	chr9:140512934-140513450	Hela-S3	cervix:	n/a	n/a
28	BRCA1	chr9:140513909-140514238	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr9:140513844-140513980	HepG2	liver:	n/a	n/a
30	BRCA1	chr9:140513086-140513352	GM12878	blood:	n/a	n/a
31	BRCA1	chr9:140513152-140513282	HepG2	liver:	n/a	n/a
32	CBX3	chr9:140512733-140513293	K562	blood:	n/a	n/a
33	CCNT2	chr9:140513735-140513845	K562	blood:	n/a	n/a
34	CCNT2	chr9:140512723-140513535	K562	blood:	n/a	n/a
35	CCNT2	chr9:140508742-140508951	K562	blood:	n/a	n/a
36	CCNT2	chr9:140509152-140509313	K562	blood:	n/a	n/a
37	CEBPB	chr9:140512742-140513222	K562	blood:	n/a	n/a
38	CEBPB	chr9:140512669-140513414	Hela-S3	cervix:	n/a	n/a
39	CEBPB	chr9:140512805-140513316	GM12878	blood:	n/a	n/a
40	CEBPB	chr9:140512554-140513344	MCF-7	breast:	n/a	n/a
41	CEBPB	chr9:140512826-140513387	ECC-1	luminal epithelium:	n/a	n/a
42	CEBPB	chr9:140512587-140512863	H1-hESC	embryonic stem cell:	n/a	n/a
43	CEBPD	chr9:140513108-140513505	HepG2	liver:	n/a	n/a
44	CHD1	chr9:140513894-140514664	H1-hESC	embryonic stem cell:	n/a	n/a
45	CHD1	chr9:140512837-140513161	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD1	chr9:140513640-140514599	IMR90	lung:	n/a	n/a
47	CHD1	chr9:140512891-140513388	GM12878	blood:	n/a	n/a
48	CHD1	chr9:140513823-140514554	GM12878	blood:	n/a	n/a
49	CHD2	chr9:140512906-140513380	K562	blood:	n/a	n/a
50	CHD2	chr9:140513879-140513998	K562	blood:	n/a	n/a

(count:552 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140514016-140514066	HRE	kidney:	n/a
2	chr9:140510480-140510530	GM06990	blood:	n/a
3	chr9:140512815-140512865	MCF10A-Er-Src	breast:	n/a
4	chr9:140514016-140514066	HRE	kidney:	n/a
5	chr9:140510480-140510530	GM06990	blood:	n/a
6	chr9:140512815-140512865	MCF10A-Er-Src	breast:	n/a
7	chr9:140515874-140515924	ECC-1	luminal epithelium:	n/a
8	chr9:140512455-140512505	AG09319	gingival:	n/a
9	chr9:140513113-140513163	NHBE	bronchial:	n/a
10	chr9:140514393-140514443	HAEpiC	amniotic membrane:	n/a
11	chr9:140515874-140515924	SAEC	small airway:	n/a
12	chr9:140512513-140512563	A549	lung:	n/a
13	chr9:140515874-140515924	AG10803	skin:	n/a
14	chr9:140513113-140513163	Hela-S3	cervix:	n/a
15	chr9:140510480-140510530	MCF10A-Er-Src	breast:	n/a
16	chr9:140514393-140514443	SK-N-SH	brain:	n/a
17	chr9:140510480-140510530	PFSK-1	brain:	n/a
18	chr9:140513113-140513163	GM12892	blood:	n/a
19	chr9:140510480-140510530	NH-A	brain:	n/a
20	chr9:140515874-140515924	GM19239	blood:	n/a
21	chr9:140512815-140512865	HL-60	blood:	n/a
22	chr9:140510480-140510530	HepG2	liver:	n/a
23	chr9:140512815-140512865	HRE	kidney:	n/a
24	chr9:140513215-140513265	NB4	blood:	n/a
25	chr9:140514393-140514443	MCF10A-Er-Src	breast:	n/a
26	chr9:140515874-140515924	Caco-2	colon:	n/a
27	chr9:140512455-140512505	HEEpiC	esophagus:	n/a
28	chr9:140512815-140512865	SK-N-MC	brain:	n/a
29	chr9:140515874-140515924	Hela-S3	cervix:	n/a
30	chr9:140513215-140513265	SAEC	small airway:	n/a
31	chr9:140514393-140514443	LNCaP	prostate:	n/a
32	chr9:140512815-140512865	GM12892	blood:	n/a
33	chr9:140513215-140513265	HepG2	liver:	n/a
34	chr9:140514393-140514443	K562	blood:	n/a
35	chr9:140513215-140513265	ECC-1	luminal epithelium:	n/a
36	chr9:140512815-140512865	AG09319	gingival:	n/a
37	chr9:140514393-140514443	SK-N-SH_RA	brain:	n/a
38	chr9:140512455-140512505	Jurkat	blood:	n/a
39	chr9:140512815-140512865	HPAEpiC	pulmonary alveolar:	n/a
40	chr9:140510480-140510530	T-47D	breast:	n/a
41	chr9:140510480-140510530	IMR90	lung:	fetal
42	chr9:140512815-140512865	AoSMC	blood vessel:	n/a
43	chr9:140510480-140510530	HMEC	breast:	n/a
44	chr9:140514016-140514066	HIPEpiC	eye:	n/a
45	chr9:140513113-140513163	AG09319	gingival:	n/a
46	chr9:140512513-140512563	U87	brain:	n/a
47	chr9:140514393-140514443	HNPCEpiC	eye:	n/a
48	chr9:140514393-140514443	U87	brain:	n/a
49	chr9:140514016-140514066	GM12878	blood:	n/a
50	chr9:140510480-140510530	AG04450	lung:	fetal

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:102023934..102026552-chr9:140506731..140509354,2	MCF-7	breast:
2	chr9:140481390..140486340-chr9:140509681..140515296,7	K562	blood:
3	chr9:140117969..140119690-chr9:140505138..140507974,2	MCF-7	breast:
4	chr9:140445002..140446703-chr9:140512317..140515053,2	MCF-7	breast:
5	chr15:80213455..80216232-chr9:140505941..140507985,2	MCF-7	breast:
6	chr9:140444995..140447677-chr9:140508337..140511208,2	MCF-7	breast:
7	chr17:80817947..80820292-chr9:140513382..140515787,2	MCF-7	breast:
8	chr8:96085236..96087766-chr9:140513238..140514849,2	MCF-7	breast:
9	chr9:139980430..139982105-chr9:140507982..140509636,2	MCF-7	breast:
10	chr9:140515440..140517099-chr9:140525922..140527990,2	K562	blood:
11	chr9:140470864..140473169-chr9:140508209..140510262,2	K562	blood:
12	chr9:140469278..140479132-chr9:140503165..140510984,27	MCF-7	breast:
13	chr9:140470852..140475352-chr9:140511735..140515041,9	MCF-7	breast:
14	chr9:140512988..140515143-chr9:140515432..140518984,3	K562	blood:
15	chr9:140510252..140513201-chr9:140591330..140593988,2	MCF-7	breast:
16	chr9:140426937..140428831-chr9:140509967..140512178,2	K562	blood:
17	chr9:140172197..140174221-chr9:140511916..140514176,2	K562	blood:
18	chr9:140444528..140447263-chr9:140504669..140508200,5	MCF-7	breast:
19	chr9:140511122..140512699-chr9:140559780..140561959,2	MCF-7	breast:
20	chr9:140467532..140470216-chr9:140512251..140515096,2	MCF-7	breast:
21	chr11:66609649..66612516-chr9:140514616..140517037,2	MCF-7	breast:
22	chr9:140473011..140477060-chr9:140511720..140517022,6	K562	blood:
23	chr14:36295481..36295998-chr9:140513118..140513972,2	Hela-S3	cervix:
24	chr5:38556248..38557150-chr9:140513261..140513996,2	Hela-S3	cervix:
25	chr9:140513993..140515601-chr9:140519538..140521041,2	K562	blood:
26	chr9:140469283..140475998-chr9:140510945..140517022,12	K562	blood:
27	chr9:140482399..140489274-chr9:140503366..140510626,23	MCF-7	breast:
28	chr9:140511878..140514123-chr9:140514786..140517240,3	MCF-7	breast:
29	chr9:140481624..140488545-chr9:140511605..140516057,16	MCF-7	breast:
30	chr9:140441799..140446269-chr9:140505086..140508400,5	MCF-7	breast:
31	chr9:140510590..140512160-chr9:140570027..140572607,2	MCF-7	breast:
32	chr14:96967956..96969589-chr9:140512244..140513858,2	MCF-7	breast:
33	chr9:140512926..140516965-chr9:140518236..140522251,5	MCF-7	breast:
34	chr9:140482066..140484246-chr9:140508462..140511181,2	K562	blood:
35	chr9:140513748..140516192-chr9:140572995..140575836,2	MCF-7	breast:
36	chr9:140510301..140512347-chr9:140541289..140543188,2	MCF-7	breast:
37	chr9:140119502..140121788-chr9:140512732..140514255,2	MCF-7	breast:
38	chr9:140509926..140512200-chr9:140526442..140528104,2	MCF-7	breast:
39	chr10:60027871..60028772-chr9:140513692..140514235,2	Hela-S3	cervix:
40	chr9:140481402..140486615-chr9:140511490..140514947,5	K562	blood:
41	chr9:140512840..140515056-chr9:140515180..140517797,2	K562	blood:

No data

Variant related genes	Relation type
ARRDC1	TF binding region
EHMT1	TF binding region
C9orf37	TF binding region
ARRDC1	CpG island
EHMT1	CpG island
C9orf37	CpG island
ENSG00000259332	chromatin interactions
ENSG00000258498	chromatin interactions
ENSG00000257028	chromatin interactions
ENSG00000244968	chromatin interactions
ENSG00000197191	chromatin interactions
ENSG00000260806	chromatin interactions
ENSG00000090060	chromatin interactions
ENSG00000258938	chromatin interactions
ENSG00000100916	chromatin interactions
ENSG00000148399	chromatin interactions
ENSG00000173653	chromatin interactions
ENSG00000141556	chromatin interactions
ENSG00000130653	chromatin interactions
ENSG00000165724	chromatin interactions
ENSG00000203993	chromatin interactions
ENSG00000182154	chromatin interactions
ENSG00000177239	chromatin interactions
ENSG00000180953	chromatin interactions
ENSG00000181090	chromatin interactions
ENSG00000113594	chromatin interactions
ENSG00000245080	chromatin interactions
ENSG00000268996	chromatin interactions
ENSG00000198113	chromatin interactions
ENSG00000259642	chromatin interactions

Extended variants
information (count: 522 )
Associated
traits (count: 20 )

Variant overlapped rSNPs/rCNVs (count:522 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4962227	chr9:140507688-140507689	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs373235964	chr9:140507711-140507712	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
3	rs74547997	chr9:140507717-140507718	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
4	rs542854015	chr9:140507783-140507784	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
5	rs559518642	chr9:140507796-140507797	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
6	rs571838386	chr9:140507803-140507804	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
7	rs371221883	chr9:140507821-140507822	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
8	rs564126036	chr9:140507824-140507825	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
9	rs200350999	chr9:140507854-140507855	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
10	rs532765467	chr9:140507866-140507867	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
11	rs548839548	chr9:140507875-140507876	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
12	rs542799717	chr9:140507880-140507881	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
13	rs374382325	chr9:140507888-140507889	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
14	rs563399186	chr9:140507889-140507890	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
15	rs200690444	chr9:140507892-140507893	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
16	rs367605215	chr9:140507906-140507907	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
17	rs200209627	chr9:140507913-140507914	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
18	rs565862554	chr9:140507915-140507916	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
19	rs201358396	chr9:140507922-140507923	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
20	rs551555298	chr9:140507955-140507956	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
21	rs571617831	chr9:140507969-140507970	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
22	rs62590241	chr9:140507975-140507976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
23	rs190534300	chr9:140507991-140507992	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
24	rs373220745	chr9:140507993-140507994	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
25	rs369152586	chr9:140508018-140508019	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
26	rs192939150	chr9:140508019-140508020	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
27	rs34249205	chr9:140508031-140508032	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs201064974	chr9:140508039-140508040	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
29	rs200801384	chr9:140508048-140508049	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
30	rs148754593	chr9:140508079-140508080	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
31	rs553186451	chr9:140508080-140508081	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
32	rs573068526	chr9:140508083-140508084	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
33	rs142271866	chr9:140508098-140508099	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
34	rs369993512	chr9:140508121-140508122	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
35	rs150832353	chr9:140508125-140508126	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
36	rs140006356	chr9:140508136-140508137	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
37	rs139403185	chr9:140508155-140508156	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
38	rs577578185	chr9:140508170-140508171	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
39	rs201795480	chr9:140508171-140508172	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
40	rs200162693	chr9:140508178-140508179	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
41	rs188565233	chr9:140508188-140508189	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
42	rs563249234	chr9:140508197-140508198	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
43	rs113204937	chr9:140508222-140508223	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
44	rs200021050	chr9:140508235-140508236	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
45	rs1475495	chr9:140508255-140508256	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
46	rs11137151	chr9:140508258-140508259	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs528226106	chr9:140508324-140508325	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
48	rs368344419	chr9:140508330-140508331	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
49	rs551861205	chr9:140508363-140508364	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
50	rs527732535	chr9:140508445-140508446	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:20)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:1195 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140501400-140508400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:140501600-140507800	Weak transcription	Aorta	Aorta
3	chr9:140501600-140508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:140501800-140509400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:140501800-140510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:140501800-140512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:140502000-140507800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:140502000-140508600	Weak transcription	Ovary	ovary
9	chr9:140502200-140507800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:140502200-140507800	Weak transcription	Dnd41	blood
11	chr9:140502200-140508000	Weak transcription	Brain Angular Gyrus	brain
12	chr9:140502200-140508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:140502400-140512000	Weak transcription	Fetal Brain Male	brain
14	chr9:140503200-140508200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:140503400-140507800	Weak transcription	Fetal Thymus	thymus
16	chr9:140503600-140507800	Weak transcription	Primary B cells from cord blood	blood
17	chr9:140503600-140507800	Weak transcription	Brain Anterior Caudate	brain
18	chr9:140503600-140507800	Weak transcription	Thymus	Thymus
19	chr9:140503600-140508000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:140504200-140508000	Enhancers	Placenta	Placenta
21	chr9:140505200-140508000	Enhancers	Lung	lung
22	chr9:140505400-140507800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:140505400-140508000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:140505400-140508000	Flanking Active TSS	Hela-S3	cervix
25	chr9:140505400-140509800	Genic enhancers	Gastric	stomach
26	chr9:140505600-140507800	Genic enhancers	Fetal Intestine Small	intestine
27	chr9:140505600-140507800	Enhancers	Right Ventricle	heart
28	chr9:140505600-140508000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:140505600-140508000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr9:140506000-140508000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
31	chr9:140506000-140508000	Enhancers	Adipose Nuclei	Adipose
32	chr9:140506000-140508000	Flanking Active TSS	HMEC	breast
33	chr9:140506000-140508800	Genic enhancers	Spleen	Spleen
34	chr9:140506200-140507800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:140506200-140507800	Enhancers	NHDF-Ad	bronchial
36	chr9:140506400-140508400	Weak transcription	Psoas Muscle	Psoas
37	chr9:140506600-140507800	Enhancers	Pancreas	Pancrea
38	chr9:140506600-140508000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:140506600-140508400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:140506600-140508600	Weak transcription	GM12878-XiMat	blood
41	chr9:140506600-140512200	Weak transcription	Small Intestine	intestine
42	chr9:140506800-140507800	Enhancers	Fetal Intestine Large	intestine
43	chr9:140506800-140508000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:140506800-140508000	Weak transcription	Brain Substantia Nigra	brain
45	chr9:140506800-140508200	Weak transcription	Liver	Liver
46	chr9:140506800-140509000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:140507000-140507800	Flanking Active TSS	Colonic Mucosa	Colon
48	chr9:140507000-140507800	Genic enhancers	Monocytes-CD14+_RO01746	blood
49	chr9:140507000-140508000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr9:140507000-140508000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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