Variant report

Variant	nsv894674
Chromosome Location	chr9:140508222-140518576
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1193)
CpG islands
(count:550)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1193 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:140512995-140513194	K562	blood:	n/a	n/a
2	ARID3A	chr9:140514701-140514718	K562	blood:	n/a	n/a
3	ATF1	chr9:140512908-140513272	K562	blood:	n/a	n/a
4	ATF2	chr9:140512882-140513291	GM12878	blood:	n/a	n/a
5	ATF2	chr9:140513019-140513356	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr9:140512599-140513361	GM12878	blood:	n/a	n/a
7	ATF2	chr9:140512846-140513342	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr9:140513089-140513438	A549	lung:	n/a	chr9:140513400-140513409
9	ATF3	chr9:140513263-140513470	GM12878	blood:	n/a	chr9:140513400-140513409
10	ATF3	chr9:140512666-140513485	A549	lung:	n/a	chr9:140513400-140513409
11	ATF3	chr9:140513171-140513459	H1-hESC	embryonic stem cell:	n/a	chr9:140513400-140513409
12	ATF3	chr9:140513079-140513492	K562	blood:	n/a	chr9:140513400-140513409
13	ATF3	chr9:140513192-140513485	HepG2	liver:	n/a	chr9:140513400-140513409
14	ATF3	chr9:140512941-140513477	K562	blood:	n/a	chr9:140513400-140513409
15	BACH1	chr9:140512354-140512455	K562	blood:	n/a	n/a
16	BCL3	chr9:140512432-140513462	GM12878	blood:	n/a	n/a
17	BCL3	chr9:140505934-140508793	A549	lung:	n/a	n/a
18	BCL3	chr9:140512082-140513429	A549	lung:	n/a	n/a
19	BCL3	chr9:140512554-140513408	A549	lung:	n/a	n/a
20	BCL3	chr9:140506032-140508286	A549	lung:	n/a	n/a
21	BCLAF1	chr9:140512590-140513424	GM12878	blood:	n/a	n/a
22	BHLHE40	chr9:140513901-140514002	GM12878	blood:	n/a	n/a
23	BHLHE40	chr9:140512827-140513435	GM12878	blood:	n/a	n/a
24	BHLHE40	chr9:140513027-140513435	HepG2	liver:	n/a	n/a
25	BHLHE40	chr9:140512971-140513406	K562	blood:	n/a	n/a
26	BRCA1	chr9:140513844-140513980	HepG2	liver:	n/a	n/a
27	BRCA1	chr9:140513909-140514238	Hela-S3	cervix:	n/a	n/a
28	BRCA1	chr9:140512934-140513450	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr9:140513086-140513352	GM12878	blood:	n/a	n/a
30	BRCA1	chr9:140513152-140513282	HepG2	liver:	n/a	n/a
31	BRCA1	chr9:140512436-140512563	Hela-S3	cervix:	n/a	n/a
32	CBX3	chr9:140512733-140513293	K562	blood:	n/a	n/a
33	CCNT2	chr9:140509152-140509313	K562	blood:	n/a	n/a
34	CCNT2	chr9:140508742-140508951	K562	blood:	n/a	n/a
35	CCNT2	chr9:140512723-140513535	K562	blood:	n/a	n/a
36	CCNT2	chr9:140513735-140513845	K562	blood:	n/a	n/a
37	CEBPB	chr9:140512805-140513316	GM12878	blood:	n/a	n/a
38	CEBPB	chr9:140512554-140513344	MCF-7	breast:	n/a	n/a
39	CEBPB	chr9:140512826-140513387	ECC-1	luminal epithelium:	n/a	n/a
40	CEBPB	chr9:140512669-140513414	Hela-S3	cervix:	n/a	n/a
41	CEBPB	chr9:140512587-140512863	H1-hESC	embryonic stem cell:	n/a	n/a
42	CEBPB	chr9:140512742-140513222	K562	blood:	n/a	n/a
43	CEBPD	chr9:140513108-140513505	HepG2	liver:	n/a	n/a
44	CHD1	chr9:140513894-140514664	H1-hESC	embryonic stem cell:	n/a	n/a
45	CHD1	chr9:140512837-140513161	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD1	chr9:140513823-140514554	GM12878	blood:	n/a	n/a
47	CHD1	chr9:140512891-140513388	GM12878	blood:	n/a	n/a
48	CHD1	chr9:140513640-140514599	IMR90	lung:	n/a	n/a
49	CHD2	chr9:140512763-140513362	H1-hESC	embryonic stem cell:	n/a	n/a
50	CHD2	chr9:140513879-140513998	K562	blood:	n/a	n/a

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140512513-140512563	SKMC	muscle:	n/a
2	chr9:140512513-140512563	SKMC	muscle:	n/a
3	chr9:140512815-140512865	MCF-7	breast:	n/a
4	chr9:140512455-140512505	CMK	blood:	n/a
5	chr9:140515874-140515924	AG09309	skin:	n/a
6	chr9:140512455-140512505	BJ	skin:	n/a
7	chr9:140512815-140512865	K562	blood:	n/a
8	chr9:140515874-140515924	H1-hESC	embryonic stem cell:	embryo
9	chr9:140510480-140510530	CMK	blood:	n/a
10	chr9:140514393-140514443	AG09309	skin:	n/a
11	chr9:140514393-140514443	AG10803	skin:	n/a
12	chr9:140514393-140514443	ECC-1	luminal epithelium:	n/a
13	chr9:140510480-140510530	HEK293	kidney:	embryo
14	chr9:140512815-140512865	SAEC	small airway:	n/a
15	chr9:140510480-140510530	SK-N-SH	brain:	n/a
16	chr9:140513113-140513163	HAEpiC	amniotic membrane:	n/a
17	chr9:140515874-140515924	ECC-1	luminal epithelium:	n/a
18	chr9:140512455-140512505	H1-hESC	embryonic stem cell:	embryo
19	chr9:140512455-140512505	U87	brain:	n/a
20	chr9:140513113-140513163	H1-hESC	embryonic stem cell:	embryo
21	chr9:140513215-140513265	LNCaP	prostate:	n/a
22	chr9:140513113-140513163	AG09319	gingival:	n/a
23	chr9:140513113-140513163	AoSMC	blood vessel:	n/a
24	chr9:140514016-140514066	HEEpiC	esophagus:	n/a
25	chr9:140513215-140513265	NT2-D1	testis:	n/a
26	chr9:140513113-140513163	NT2-D1	testis:	n/a
27	chr9:140512513-140512563	ProgFib	skin:	n/a
28	chr9:140512513-140512563	HMEC	breast:	n/a
29	chr9:140514393-140514443	H1-hESC	embryonic stem cell:	embryo
30	chr9:140512815-140512865	HNPCEpiC	eye:	n/a
31	chr9:140512513-140512563	GM19239	blood:	n/a
32	chr9:140510480-140510530	NHDF-neo	bronchial:	n/a
33	chr9:140510480-140510530	LNCaP	prostate:	n/a
34	chr9:140510480-140510530	HEEpiC	esophagus:	n/a
35	chr9:140512815-140512865	RPTEC	kidney:	n/a
36	chr9:140512513-140512563	LNCaP	prostate:	n/a
37	chr9:140514016-140514066	GM12878	blood:	n/a
38	chr9:140513215-140513265	RPTEC	kidney:	n/a
39	chr9:140513113-140513163	GM12892	blood:	n/a
40	chr9:140512455-140512505	Caco-2	colon:	n/a
41	chr9:140512513-140512563	PFSK-1	brain:	n/a
42	chr9:140512455-140512505	NH-A	brain:	n/a
43	chr9:140514016-140514066	GM12891	blood:	n/a
44	chr9:140515874-140515924	PFSK-1	brain:	n/a
45	chr9:140512815-140512865	NB4	blood:	n/a
46	chr9:140514016-140514066	NB4	blood:	n/a
47	chr9:140514393-140514443	RPTEC	kidney:	n/a
48	chr9:140512815-140512865	HIPEpiC	eye:	n/a
49	chr9:140515874-140515924	GM12892	blood:	n/a
50	chr9:140515874-140515924	NHBE	bronchial:	n/a

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:140511878..140514123-chr9:140514786..140517240,3	MCF-7	breast:
2	chr9:140469283..140475998-chr9:140510945..140517022,12	K562	blood:
3	chr9:140444995..140447677-chr9:140508337..140511208,2	MCF-7	breast:
4	chr9:140481624..140488545-chr9:140511605..140516057,16	MCF-7	breast:
5	chr9:140513993..140515601-chr9:140519538..140521041,2	K562	blood:
6	chr17:80817947..80820292-chr9:140513382..140515787,2	MCF-7	breast:
7	chr9:140510590..140512160-chr9:140570027..140572607,2	MCF-7	breast:
8	chr9:140467532..140470216-chr9:140512251..140515096,2	MCF-7	breast:
9	chr9:140511122..140512699-chr9:140559780..140561959,2	MCF-7	breast:
10	chr9:140172197..140174221-chr9:140511916..140514176,2	K562	blood:
11	chr14:36295481..36295998-chr9:140513118..140513972,2	Hela-S3	cervix:
12	chr11:66609649..66612516-chr9:140514616..140517037,2	MCF-7	breast:
13	chr9:140482399..140489274-chr9:140503366..140510626,23	MCF-7	breast:
14	chr9:140470852..140475352-chr9:140511735..140515041,9	MCF-7	breast:
15	chr9:140481390..140486340-chr9:140509681..140515296,7	K562	blood:
16	chr9:140470864..140473169-chr9:140508209..140510262,2	K562	blood:
17	chr9:140509926..140512200-chr9:140526442..140528104,2	MCF-7	breast:
18	chr9:140513748..140516192-chr9:140572995..140575836,2	MCF-7	breast:
19	chr9:140482066..140484246-chr9:140508462..140511181,2	K562	blood:
20	chr9:139980430..139982105-chr9:140507982..140509636,2	MCF-7	breast:
21	chr9:140515440..140517099-chr9:140525922..140527990,2	K562	blood:
22	chr9:140445002..140446703-chr9:140512317..140515053,2	MCF-7	breast:
23	chr5:38556248..38557150-chr9:140513261..140513996,2	Hela-S3	cervix:
24	chr9:140473011..140477060-chr9:140511720..140517022,6	K562	blood:
25	chr9:140510252..140513201-chr9:140591330..140593988,2	MCF-7	breast:
26	chr9:140512840..140515056-chr9:140515180..140517797,2	K562	blood:
27	chr9:140510301..140512347-chr9:140541289..140543188,2	MCF-7	breast:
28	chr9:140481402..140486615-chr9:140511490..140514947,5	K562	blood:
29	chr9:140119502..140121788-chr9:140512732..140514255,2	MCF-7	breast:
30	chr9:140441799..140446269-chr9:140505086..140508400,5	MCF-7	breast:
31	chr9:140512926..140516965-chr9:140518236..140522251,5	MCF-7	breast:
32	chr14:102023934..102026552-chr9:140506731..140509354,2	MCF-7	breast:
33	chr14:96967956..96969589-chr9:140512244..140513858,2	MCF-7	breast:
34	chr10:60027871..60028772-chr9:140513692..140514235,2	Hela-S3	cervix:
35	chr9:140426937..140428831-chr9:140509967..140512178,2	K562	blood:
36	chr9:140469278..140479132-chr9:140503165..140510984,27	MCF-7	breast:
37	chr9:140512988..140515143-chr9:140515432..140518984,3	K562	blood:
38	chr8:96085236..96087766-chr9:140513238..140514849,2	MCF-7	breast:

No data

Variant related genes	Relation type
ARRDC1	TF binding region
EHMT1	TF binding region
C9orf37	TF binding region
ARRDC1	CpG island
EHMT1	CpG island
C9orf37	CpG island
ENSG00000244968	chromatin interactions
ENSG00000100916	chromatin interactions
ENSG00000197191	chromatin interactions
ENSG00000130653	chromatin interactions
ENSG00000182154	chromatin interactions
ENSG00000177239	chromatin interactions
ENSG00000148399	chromatin interactions
ENSG00000268996	chromatin interactions
ENSG00000198113	chromatin interactions
ENSG00000165724	chromatin interactions
ENSG00000090060	chromatin interactions
ENSG00000258938	chromatin interactions
ENSG00000173653	chromatin interactions
ENSG00000245080	chromatin interactions
ENSG00000203993	chromatin interactions
ENSG00000113594	chromatin interactions
ENSG00000260806	chromatin interactions
ENSG00000258498	chromatin interactions
ENSG00000181090	chromatin interactions
ENSG00000141556	chromatin interactions

Extended variants
information (count: 480 )
Associated
traits (count: 20 )

Variant overlapped rSNPs/rCNVs (count:480 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113204937	chr9:140508222-140508223	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
2	rs200021050	chr9:140508235-140508236	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
3	rs1475495	chr9:140508255-140508256	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
4	rs11137151	chr9:140508258-140508259	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs528226106	chr9:140508324-140508325	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
6	rs368344419	chr9:140508330-140508331	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
7	rs551861205	chr9:140508363-140508364	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
8	rs527732535	chr9:140508445-140508446	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
9	rs45535834	chr9:140508446-140508447	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
10	rs202149444	chr9:140508467-140508468	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
11	rs200199375	chr9:140508471-140508472	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
12	rs145443838	chr9:140508479-140508480	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
13	rs567306260	chr9:140508492-140508493	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
14	rs536564852	chr9:140508513-140508514	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
15	rs373698169	chr9:140508527-140508528	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
16	rs144526192	chr9:140508528-140508529	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
17	rs146599172	chr9:140508544-140508545	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
18	rs141353615	chr9:140508573-140508574	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
19	rs143839448	chr9:140508600-140508601	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
20	rs145510266	chr9:140508609-140508610	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
21	rs148857250	chr9:140508612-140508613	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
22	rs368553334	chr9:140508613-140508614	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
23	rs371069629	chr9:140508678-140508679	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
24	rs10124016	chr9:140508684-140508685	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs368287069	chr9:140508688-140508689	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
26	rs201966655	chr9:140508693-140508694	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
27	rs564889718	chr9:140508695-140508696	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
28	rs371483485	chr9:140508722-140508723	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
29	rs375187096	chr9:140508723-140508724	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
30	rs144256580	chr9:140508745-140508746	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
31	rs143436908	chr9:140508756-140508757	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
32	rs200811759	chr9:140508760-140508761	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
33	rs147985210	chr9:140508772-140508773	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
34	rs372144895	chr9:140508786-140508787	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
35	rs376105916	chr9:140508787-140508788	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
36	rs140868031	chr9:140508795-140508796	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
37	rs146163923	chr9:140508816-140508817	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
38	rs368099857	chr9:140508820-140508821	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
39	rs199665438	chr9:140508828-140508829	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
40	rs138785809	chr9:140508833-140508834	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
41	rs371706149	chr9:140508835-140508836	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
42	rs565068957	chr9:140508840-140508841	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
43	rs142800608	chr9:140508850-140508851	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
44	rs113768660	chr9:140508858-140508859	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
45	rs200829207	chr9:140508862-140508863	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
46	rs111233234	chr9:140508882-140508883	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
47	rs375807562	chr9:140508910-140508911	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
48	rs147417622	chr9:140508914-140508915	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
49	rs2797941	chr9:140508954-140508955	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs199642721	chr9:140508955-140508956	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:20)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:1115 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140501400-140508400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:140501800-140509400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:140501800-140510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:140501800-140512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:140502000-140508600	Weak transcription	Ovary	ovary
6	chr9:140502200-140508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:140502400-140512000	Weak transcription	Fetal Brain Male	brain
8	chr9:140505400-140509800	Genic enhancers	Gastric	stomach
9	chr9:140506000-140508800	Genic enhancers	Spleen	Spleen
10	chr9:140506400-140508400	Weak transcription	Psoas Muscle	Psoas
11	chr9:140506600-140508400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:140506600-140508600	Weak transcription	GM12878-XiMat	blood
13	chr9:140506600-140512200	Weak transcription	Small Intestine	intestine
14	chr9:140506800-140509000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:140507000-140508400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:140507000-140511200	Strong transcription	Brain Cingulate Gyrus	brain
17	chr9:140507000-140511400	Weak transcription	Fetal Heart	heart
18	chr9:140507200-140508600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:140507200-140508800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:140507200-140509200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:140507200-140510400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:140507200-140510800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:140507200-140511000	Weak transcription	HepG2	liver
24	chr9:140507200-140511200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr9:140507200-140511400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:140507200-140511600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:140507200-140511600	Strong transcription	Fetal Brain Female	brain
28	chr9:140507200-140511800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr9:140507200-140512200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:140507200-140512400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr9:140507400-140508400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:140507400-140508400	Weak transcription	Left Ventricle	heart
33	chr9:140507400-140508800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr9:140507400-140510600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr9:140507400-140510800	Weak transcription	K562	blood
36	chr9:140507400-140511200	Weak transcription	HUVEC	blood vessel
37	chr9:140507400-140511600	Weak transcription	Fetal Lung	lung
38	chr9:140507400-140511800	Strong transcription	Fetal Stomach	stomach
39	chr9:140507400-140511800	Weak transcription	Right Atrium	heart
40	chr9:140507400-140512000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr9:140507400-140512000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr9:140507400-140512000	Weak transcription	HSMMtube	muscle
43	chr9:140507600-140508400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
44	chr9:140507600-140508400	Enhancers	Stomach Mucosa	stomach
45	chr9:140507600-140510400	Strong transcription	Primary T cells from cord blood	blood
46	chr9:140507600-140510600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:140507600-140510600	Strong transcription	Brain Germinal Matrix	brain
48	chr9:140507600-140510800	Weak transcription	NH-A	brain
49	chr9:140507600-140511000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:140507600-140511200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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