Variant report

Variant	nsv894706
Chromosome Location	chr10:518199-583548
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:37)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:561185..563586-chr10:574597..576241,2	MCF-7	breast:
2	chr10:551731..554315-chr10:554873..557476,2	MCF-7	breast:
3	chr10:572682..575293-chr10:584649..586274,2	MCF-7	breast:
4	chr10:551731..554315-chr10:554873..557476,2	MCF-7	breast:
5	chr10:556490..559348-chr10:561200..563635,4	MCF-7	breast:
6	chr10:582102..583966-chr10:587212..590042,3	K562	blood:
7	chr10:550299..552878-chr10:830515..832425,2	MCF-7	breast:
8	chr10:532151..534499-chr10:544884..546928,2	MCF-7	breast:
9	chr10:561226..563645-chr10:565375..568269,2	K562	blood:
10	chr10:577006..578982-chr10:591616..594323,2	MCF-7	breast:
11	chr10:564005..566324-chr10:657951..660938,2	MCF-7	breast:
12	chr10:556492..557579-chr10:835209..836234,4	MCF-7	breast:
13	chr10:578987..580530-chr10:655147..657083,2	MCF-7	breast:
14	chr10:555810..559181-chr10:734014..736581,3	MCF-7	breast:
15	chr10:561226..563645-chr10:565375..568269,2	K562	blood:
16	chr10:557278..559128-chr10:564264..566805,2	MCF-7	breast:
17	chr10:561185..563586-chr10:574597..576241,2	MCF-7	breast:
18	chr10:537447..538953-chr10:549708..551934,2	K562	blood:
19	chr10:565703..567575-chr10:571015..572923,2	MCF-7	breast:
20	chr10:557278..559128-chr10:564264..566805,2	MCF-7	breast:
21	chr10:540598..544173-chr10:734342..736581,3	MCF-7	breast:
22	chr10:556626..557550-chr10:572468..573398,6	MCF-7	breast:
23	chr10:481593..483760-chr10:562967..565503,2	MCF-7	breast:
24	chr10:480114..482093-chr10:536916..538493,2	MCF-7	breast:
25	chr10:556739..557438-chr10:855963..856846,3	MCF-7	breast:
26	chr10:537447..538953-chr10:549708..551934,2	K562	blood:
27	chr10:556626..557550-chr10:572468..573398,6	MCF-7	breast:
28	chr10:565187..567915-chr10:586471..588342,2	MCF-7	breast:
29	chr10:583403..585208-chr10:714450..715956,2	K562	blood:
30	chr10:515790..518428-chr10:733569..736309,2	MCF-7	breast:
31	chr10:532151..534499-chr10:544884..546928,2	MCF-7	breast:
32	chr10:556675..557469-chr10:840259..840863,3	MCF-7	breast:
33	chr10:565703..567575-chr10:571015..572923,2	MCF-7	breast:
34	chr10:556641..557560-chr10:835088..835885,2	K562	blood:
35	chr10:580078..582771-chr10:585483..587204,2	MCF-7	breast:
36	chr10:556490..559348-chr10:561200..563635,4	MCF-7	breast:
37	chr10:556841..557546-chr10:834923..836004,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233021	chromatin interactions
ENSG00000151240	chromatin interactions

Extended variants
information (count: 3965 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:3965 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11252614	chr10:518199-518200	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs199582595	chr10:518210-518211	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs146852292	chr10:518217-518218	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs564527430	chr10:518221-518222	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs367994056	chr10:518264-518265	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs187148794	chr10:518267-518268	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs34414131	chr10:518281-518282	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs367852308	chr10:518282-518283	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs563649713	chr10:518283-518284	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs572112659	chr10:518288-518289	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs529325482	chr10:518291-518292	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs548147714	chr10:518314-518315	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs568351310	chr10:518326-518327	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs369445318	chr10:518338-518339	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs374188427	chr10:518345-518346	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs140648802	chr10:518351-518352	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs370766970	chr10:518371-518372	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs547566582	chr10:518404-518405	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs373914983	chr10:518415-518416	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs148545889	chr10:518437-518438	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs539130064	chr10:518459-518460	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs371710759	chr10:518463-518464	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs144322963	chr10:518479-518480	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs78475094	chr10:518495-518496	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs200765901	chr10:518498-518499	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs374882472	chr10:518519-518520	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs367823698	chr10:518536-518537	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs200206820	chr10:518539-518540	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs535056948	chr10:518541-518542	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs10610683	chr10:518548-518549	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs398012626	chr10:518550-518551	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs558376253	chr10:518593-518594	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs578234045	chr10:518613-518614	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs376585758	chr10:518625-518626	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs370836498	chr10:518631-518632	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs543905476	chr10:518638-518639	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs563787149	chr10:518655-518656	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs573908194	chr10:518666-518667	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs112972659	chr10:518667-518668	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs559533866	chr10:518678-518679	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs527574563	chr10:518682-518683	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs375364691	chr10:518694-518695	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs547408964	chr10:518695-518696	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs563916208	chr10:518698-518699	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs375535889	chr10:518703-518704	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs549432015	chr10:518714-518715	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs569422309	chr10:518716-518717	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs72774511	chr10:518737-518738	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs548962993	chr10:518768-518769	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs112321667	chr10:518771-518772	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2349 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:436600-521200	Weak transcription	HepG2	liver
2	chr10:497800-530400	Weak transcription	Stomach Mucosa	stomach
3	chr10:501200-529200	Weak transcription	NHDF-Ad	bronchial
4	chr10:501400-530200	Weak transcription	A549	lung
5	chr10:504600-526400	Weak transcription	Right Atrium	heart
6	chr10:505200-526600	Weak transcription	Fetal Heart	heart
7	chr10:506000-521800	Weak transcription	Esophagus	oesophagus
8	chr10:506000-524200	Weak transcription	HSMM	muscle
9	chr10:513000-531400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:513400-519400	Weak transcription	Small Intestine	intestine
11	chr10:513600-518200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:513600-519800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:513600-519800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:513600-520200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr10:513600-521400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:513600-522200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:513600-522200	Strong transcription	Fetal Muscle Leg	muscle
18	chr10:513600-522600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:513600-522600	Strong transcription	Fetal Intestine Small	intestine
20	chr10:513800-522000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:514200-518400	Strong transcription	Brain Anterior Caudate	brain
22	chr10:514200-518400	Strong transcription	Left Ventricle	heart
23	chr10:514200-518800	Strong transcription	Fetal Intestine Large	intestine
24	chr10:514200-521000	Strong transcription	HSMMtube	muscle
25	chr10:514200-522000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:514200-522600	Strong transcription	Fetal Stomach	stomach
27	chr10:514400-518600	Strong transcription	Brain Cingulate Gyrus	brain
28	chr10:514400-524600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:514600-522000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr10:514600-530400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:514800-518600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:514800-518800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:514800-518800	Strong transcription	Liver	Liver
34	chr10:514800-518800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr10:514800-519200	Strong transcription	Adipose Nuclei	Adipose
36	chr10:514800-519600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:515000-518600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:515000-518600	Enhancers	Fetal Thymus	thymus
39	chr10:515000-519400	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:515000-520200	Strong transcription	Brain Germinal Matrix	brain
41	chr10:515200-522600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:515400-519800	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr10:515400-530400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:515600-518800	Strong transcription	Right Ventricle	heart
45	chr10:515600-519800	Strong transcription	Brain Hippocampus Middle	brain
46	chr10:515600-520000	Strong transcription	NHLF	lung
47	chr10:515800-518400	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:515800-518600	Strong transcription	Gastric	stomach
49	chr10:515800-519000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:515800-519000	Strong transcription	Brain Angular Gyrus	brain

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