Variant report

Variant	nsv894715
Chromosome Location	chr10:754033-815149
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:267)
CpG islands
(count:1343)
Chromatin interactive
region (count:13)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:267 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:758256-758463	HepG2	liver:	n/a	n/a
2	ATF1	chr10:813001-813370	K562	blood:	n/a	n/a
3	BCL11A	chr10:769301-769535	GM12878	blood:	n/a	n/a
4	BCL11A	chr10:811979-812582	GM12878	blood:	n/a	n/a
5	BCL3	chr10:812586-812912	GM12878	blood:	n/a	n/a
6	BHLHE40	chr10:764330-764448	K562	blood:	n/a	n/a
7	BHLHE40	chr10:769085-769382	K562	blood:	n/a	n/a
8	BHLHE40	chr10:769894-770344	K562	blood:	n/a	n/a
9	CBX3	chr10:806640-806884	K562	blood:	n/a	n/a
10	CBX3	chr10:769860-770105	K562	blood:	n/a	n/a
11	CEBPB	chr10:758035-758475	MCF-7	breast:	n/a	chr10:758290-758301
12	CEBPB	chr10:758600-758822	HepG2	liver:	n/a	n/a
13	CEBPB	chr10:799626-799733	HepG2	liver:	n/a	n/a
14	CEBPB	chr10:758054-758413	HepG2	liver:	n/a	chr10:758290-758301
15	CEBPB	chr10:776542-776771	H1-hESC	embryonic stem cell:	n/a	chr10:776667-776678
16	CEBPB	chr10:799560-799705	K562	blood:	n/a	n/a
17	CEBPB	chr10:758560-758911	A549	lung:	n/a	n/a
18	CEBPB	chr10:758153-758435	HepG2	liver:	n/a	chr10:758290-758301
19	CEBPB	chr10:758496-758932	ECC-1	luminal epithelium:	n/a	n/a
20	CEBPB	chr10:758593-758913	ECC-1	luminal epithelium:	n/a	n/a
21	CEBPB	chr10:758051-759055	MCF-7	breast:	n/a	chr10:758290-758301
22	CEBPB	chr10:776512-776828	A549	lung:	n/a	chr10:776667-776678
23	CEBPB	chr10:758111-758888	Hela-S3	cervix:	n/a	chr10:758290-758301
24	CEBPB	chr10:758039-758854	HepG2	liver:	n/a	chr10:758290-758301
25	CEBPB	chr10:758111-758899	HepG2	liver:	n/a	chr10:758290-758301
26	CEBPB	chr10:776582-776736	Hela-S3	cervix:	n/a	chr10:776667-776678
27	CEBPB	chr10:758529-758903	K562	blood:	n/a	n/a
28	CEBPB	chr10:758494-758788	HepG2	liver:	n/a	n/a
29	CEBPB	chr10:776514-776865	HepG2	liver:	n/a	chr10:776667-776678
30	CEBPB	chr10:758430-759010	A549	lung:	n/a	n/a
31	CEBPB	chr10:758216-758902	A549	lung:	n/a	chr10:758290-758301
32	CEBPB	chr10:758539-758922	MCF-7	breast:	n/a	n/a
33	CEBPB	chr10:758593-758726	H1-hESC	embryonic stem cell:	n/a	n/a
34	CEBPB	chr10:758238-758899	IMR90	lung:	n/a	chr10:758290-758301
35	CEBPD	chr10:758141-758412	HepG2	liver:	n/a	n/a
36	CHD2	chr10:758179-758233	HepG2	liver:	n/a	n/a
37	CHD2	chr10:764260-764276	K562	blood:	n/a	n/a
38	CREB1	chr10:757989-758546	HepG2	liver:	n/a	n/a
39	CTCF	chr10:798402-798426	GM10266	blood:	n/a	n/a
40	CTCF	chr10:785780-785930	MCF-7	breast:	n/a	n/a
41	CTCF	chr10:756920-757070	GM12869	blood:	n/a	n/a
42	CTCF	chr10:775310-775349	Lung_OC	lung:	n/a	n/a
43	CTCF	chr10:785654-785665	MCF-7	breast:	n/a	n/a
44	CTCF	chr10:766140-766290	GM12867	blood:	n/a	chr10:766151-766164 chr10:766227-766235
45	CTCF	chr10:760840-760990	GM12869	blood:	n/a	n/a
46	CTCF	chr10:773380-773530	MCF-7	breast:	n/a	n/a
47	CTCF	chr10:785624-785630	MCF-7	breast:	n/a	n/a
48	CTCF	chr10:805940-806090	GM12867	blood:	n/a	n/a
49	CTCF	chr10:806040-806190	GM12869	blood:	n/a	n/a
50	CTCF	chr10:764240-764390	A549	lung:	n/a	n/a

(count:1343 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:768867-768917	HNPCEpiC	eye:	n/a
2	chr10:768867-768917	HNPCEpiC	eye:	n/a
3	chr10:766501-766551	HCF	heart:	n/a
4	chr10:783312-783362	ECC-1	luminal epithelium:	n/a
5	chr10:766294-766344	HMEC	breast:	n/a
6	chr10:769945-769995	HCM	heart:	n/a
7	chr10:773141-773191	H1-hESC	embryonic stem cell:	embryo
8	chr10:768541-768591	BJ	skin:	n/a
9	chr10:766501-766551	AG04450	lung:	fetal
10	chr10:769945-769995	BJ	skin:	n/a
11	chr10:766041-766091	GM19239	blood:	n/a
12	chr10:766294-766344	HPAEpiC	pulmonary alveolar:	n/a
13	chr10:766294-766344	Caco-2	colon:	n/a
14	chr10:773101-773151	HRE	kidney:	n/a
15	chr10:769945-769995	HEK293	kidney:	embryo
16	chr10:766041-766091	SKMC	muscle:	n/a
17	chr10:772969-773019	HCF	heart:	n/a
18	chr10:773141-773191	ProgFib	skin:	n/a
19	chr10:778073-778123	SK-N-SH_RA	brain:	n/a
20	chr10:766041-766091	GM06990	blood:	n/a
21	chr10:782282-782332	H1-hESC	embryonic stem cell:	embryo
22	chr10:766431-766481	HEEpiC	esophagus:	n/a
23	chr10:773101-773151	Jurkat	blood:	n/a
24	chr10:768867-768917	HepG2	liver:	n/a
25	chr10:783591-783641	ovcar-3	ovarian:	n/a
26	chr10:778123-778173	MCF10A-Er-Src	breast:	n/a
27	chr10:778219-778269	NB4	blood:	n/a
28	chr10:766294-766344	GM12891	blood:	n/a
29	chr10:783312-783362	Jurkat	blood:	n/a
30	chr10:773101-773151	HIPEpiC	eye:	n/a
31	chr10:768867-768917	NB4	blood:	n/a
32	chr10:766294-766344	HCF	heart:	n/a
33	chr10:772323-772373	BJ	skin:	n/a
34	chr10:768867-768917	PrEC	prostate:	n/a
35	chr10:773101-773151	T-47D	breast:	n/a
36	chr10:775353-775403	GM19239	blood:	n/a
37	chr10:766431-766481	PANC-1	pancreas:	n/a
38	chr10:783591-783641	HepG2	liver:	n/a
39	chr10:772323-772373	A549	lung:	n/a
40	chr10:768867-768917	HCF	heart:	n/a
41	chr10:766041-766091	HEEpiC	esophagus:	n/a
42	chr10:778709-778759	GM12878	blood:	n/a
43	chr10:772969-773019	A549	lung:	n/a
44	chr10:773101-773151	GM06990	blood:	n/a
45	chr10:771624-771674	HepG2	liver:	n/a
46	chr10:768867-768917	A549	lung:	n/a
47	chr10:772323-772373	RPTEC	kidney:	n/a
48	chr10:766294-766344	HNPCEpiC	eye:	n/a
49	chr10:772600-772650	HEEpiC	esophagus:	n/a
50	chr10:772969-773019	HRCEpiC	kidney:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:733710..735507-chr10:754476..756731,2	MCF-7	breast:
2	chr10:756021..758273-chr10:765053..767183,2	MCF-7	breast:
3	chr10:778218..778962-chr10:824579..825446,5	MCF-7	breast:
4	chr10:778218..778758-chr10:824666..825446,2	MCF-7	breast:
5	chr10:734350..736432-chr10:761399..763324,2	MCF-7	breast:
6	chr10:733897..735933-chr10:814143..815828,2	MCF-7	breast:
7	chr10:756021..758273-chr10:765053..767183,2	MCF-7	breast:
8	chr10:757872..760729-chr10:776939..779568,2	MCF-7	breast:
9	chr10:783561..786479-chr10:789093..790752,2	MCF-7	breast:
10	chr10:762176..765127-chr10:765238..767512,2	MCF-7	breast:
11	chr10:762176..765127-chr10:765238..767512,2	MCF-7	breast:
12	chr10:757872..760729-chr10:776939..779568,2	MCF-7	breast:
13	chr10:750983..753337-chr10:755498..757369,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf108-4	chr10:790517-790898	XLOC_008335
2	lnc-C10orf108-4	chr10:789932-789973	XLOC_008335
3	lnc-C10orf108-6	chr10:780517-780898	NONHSAT010872
4	lnc-C10orf108-6	chr10:779932-779973	NONHSAT010872

No data

Variant related genes	Relation type
ENSG00000231601	TF binding region
ENSG00000231601	CpG island
ENSG00000231601	chromatin interactions
ENSG00000151240	chromatin interactions
SEC24A	miRNA target sites
SEC23IP	miRNA target sites

Extended variants
information (count: 2804 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:2804 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2265090	chr10:754033-754034	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs562130536	chr10:754039-754040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs527930461	chr10:754047-754048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs142030932	chr10:754106-754107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113229966	chr10:754155-754156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs74115309	chr10:754197-754198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs539953446	chr10:754232-754233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs11253330	chr10:754291-754292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570423093	chr10:754359-754360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183730985	chr10:754381-754382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550170936	chr10:754403-754404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs370130972	chr10:754471-754472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs7069720	chr10:754487-754488	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs7083589	chr10:754494-754495	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs562478541	chr10:754579-754580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs554895849	chr10:754630-754631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138149087	chr10:754688-754689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs12777155	chr10:754731-754732	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs189553373	chr10:754736-754737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs180749410	chr10:754764-754765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541982293	chr10:754769-754770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs545519152	chr10:754816-754817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs562125210	chr10:754909-754910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142592665	chr10:754936-754937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs34471509	chr10:754945-754946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs575674904	chr10:754946-754947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs527342336	chr10:754954-754955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs542157905	chr10:754960-754961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs149552094	chr10:754989-754990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs527987325	chr10:754993-754994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144628354	chr10:755008-755009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11253331	chr10:755026-755027	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs143897968	chr10:755047-755048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs117131930	chr10:755048-755049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570061944	chr10:755108-755109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs187438026	chr10:755129-755130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs569333971	chr10:755136-755137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552887080	chr10:755150-755151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs569497331	chr10:755255-755256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11253332	chr10:755262-755263	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs568309147	chr10:755268-755269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs533863650	chr10:755288-755289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs538300247	chr10:755292-755293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs190189011	chr10:755315-755316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs551866216	chr10:755345-755346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539134199	chr10:755385-755386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs181743238	chr10:755393-755394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568570572	chr10:755401-755402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs484408	chr10:755412-755413	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs114270643	chr10:755413-755414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Aortic dissecting aneurysms	22263138	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:746600-758000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:757800-759400	Enhancers	Placenta	Placenta
3	chr10:757800-759800	Enhancers	Fetal Intestine Small	intestine
4	chr10:758000-758800	Enhancers	Liver	Liver
5	chr10:758000-759200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:758000-759200	Enhancers	Hela-S3	cervix
7	chr10:758000-759400	Enhancers	Fetal Intestine Large	intestine
8	chr10:758000-759600	Enhancers	HepG2	liver
9	chr10:758200-759000	Enhancers	Small Intestine	intestine
10	chr10:758200-759200	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:758600-759400	Enhancers	Stomach Mucosa	stomach
12	chr10:759400-760400	Weak transcription	Placenta	Placenta
13	chr10:760000-761400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
14	chr10:760400-761000	ZNF genes & repeats	Placenta	Placenta
15	chr10:760600-760800	ZNF genes & repeats	Gastric	stomach
16	chr10:760600-761000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:761000-768200	Weak transcription	Placenta	Placenta
18	chr10:761000-768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:762800-763200	Enhancers	Fetal Heart	heart
20	chr10:764200-764400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr10:764200-764600	Bivalent Enhancer	HepG2	liver
22	chr10:764800-772000	Weak transcription	Right Atrium	heart
23	chr10:767800-768400	Weak transcription	Spleen	Spleen
24	chr10:768200-768600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:768200-769000	Enhancers	Placenta	Placenta
26	chr10:768400-768600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:768400-768600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:768400-768600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:768400-768600	Genic enhancers	Spleen	Spleen
30	chr10:768600-768800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:768600-770000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:768600-771400	Weak transcription	Spleen	Spleen
33	chr10:769000-771600	Weak transcription	Placenta	Placenta
34	chr10:770000-770200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:770000-770200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:770000-770400	Enhancers	Pancreas	Pancrea
37	chr10:770200-771800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:770800-771000	Weak transcription	Esophagus	oesophagus
39	chr10:770800-772200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:771400-771600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:771400-772200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:771400-772200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr10:771400-772200	Enhancers	Fetal Muscle Trunk	muscle
44	chr10:771400-772200	Enhancers	Fetal Muscle Leg	muscle
45	chr10:771400-772200	Enhancers	Spleen	Spleen
46	chr10:771400-773000	Enhancers	Right Ventricle	heart
47	chr10:771600-771800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:771600-772000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:771600-772200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:771600-774800	Enhancers	Placenta	Placenta

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