Variant report

Variant	nsv894734
Chromosome Location	chr10:1325411-1351088
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:1343061..1343857-chr10:1429361..1429938,3	MCF-7	breast:
2	chr10:1276796..1278904-chr10:1331020..1332895,2	MCF-7	breast:
3	chr10:1327021..1329202-chr10:1331499..1333339,2	MCF-7	breast:
4	chr10:1337321..1341033-chr10:1341220..1344425,4	K562	blood:
5	chr10:1326145..1328602-chr10:1331091..1332912,2	K562	blood:
6	chr10:1188239..1188928-chr10:1339469..1340337,2	MCF-7	breast:
7	chr10:1320866..1322423-chr10:1331411..1333358,2	MCF-7	breast:
8	chr10:1155977..1157935-chr10:1333805..1335965,2	MCF-7	breast:
9	chr10:1343525..1344053-chr10:2964654..2965501,2	MCF-7	breast:
10	chr10:1343104..1343866-chr10:1410880..1411791,3	MCF-7	breast:
11	chr10:1314917..1317483-chr10:1331482..1333713,2	MCF-7	breast:
12	chr10:1308964..1311362-chr10:1335460..1337376,2	MCF-7	breast:
13	chr10:1327021..1329202-chr10:1331499..1333339,2	MCF-7	breast:
14	chr10:1335815..1339939-chr10:1340197..1343625,5	MCF-7	breast:
15	chr10:1326856..1329723-chr10:1336897..1339640,2	K562	blood:
16	chr10:1322383..1323906-chr10:1333565..1335622,2	MCF-7	breast:
17	chr10:1337321..1341033-chr10:1341220..1344425,4	K562	blood:
18	chr10:1326145..1328602-chr10:1331091..1332912,2	K562	blood:
19	chr10:1261061..1262909-chr10:1333610..1336037,2	MCF-7	breast:
20	chr10:1326856..1329723-chr10:1336897..1339640,2	K562	blood:
21	chr10:1311192..1311778-chr10:1335511..1336108,2	MCF-7	breast:
22	chr10:1335815..1339939-chr10:1340197..1343625,5	MCF-7	breast:

No data

Extended variants
information (count: 1111 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:1111 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2804102	chr10:1325411-1325412	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs530509674	chr10:1325445-1325446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550292712	chr10:1325479-1325480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs72762918	chr10:1325501-1325502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs184774748	chr10:1325514-1325515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs546493291	chr10:1325608-1325609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs566717409	chr10:1325629-1325630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs374315734	chr10:1325647-1325648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144984393	chr10:1325652-1325653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs551798025	chr10:1325667-1325668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571709525	chr10:1325675-1325676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs532025355	chr10:1325755-1325756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200197564	chr10:1325784-1325785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs375502690	chr10:1325787-1325788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201614966	chr10:1325799-1325800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114140864	chr10:1325803-1325804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs557460359	chr10:1325874-1325875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs186702276	chr10:1325878-1325879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs536823213	chr10:1325914-1325915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs35749231	chr10:1325918-1325919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs75243617	chr10:1325928-1325929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs191212815	chr10:1325940-1325941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368961876	chr10:1325942-1325943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs545332885	chr10:1326029-1326030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs527796740	chr10:1326084-1326085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs558111757	chr10:1326171-1326172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199778926	chr10:1326186-1326187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs574919272	chr10:1326203-1326204	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs547618542	chr10:1326248-1326249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs75622616	chr10:1326261-1326262	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs561004130	chr10:1326265-1326266	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs529760750	chr10:1326332-1326333	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs184792677	chr10:1326339-1326340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs560437486	chr10:1326380-1326381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs570922054	chr10:1326396-1326397	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs533184099	chr10:1326434-1326435	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs75643400	chr10:1326435-1326436	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs552534863	chr10:1326439-1326440	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs189301189	chr10:1326519-1326520	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs530902162	chr10:1326520-1326521	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs7920652	chr10:1326527-1326528	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs370601898	chr10:1326530-1326531	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs567712490	chr10:1326565-1326566	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs142107344	chr10:1326583-1326584	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs151177546	chr10:1326600-1326601	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs182131534	chr10:1326625-1326626	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs12784047	chr10:1326666-1326667	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs558797403	chr10:1326667-1326668	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs555540344	chr10:1326668-1326669	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs575547911	chr10:1326678-1326679	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:296 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1314000-1334200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:1317400-1328800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:1317600-1331800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:1326200-1326600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:1326200-1326600	Enhancers	NHEK	skin
6	chr10:1326400-1326600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
7	chr10:1326400-1326800	ZNF genes & repeats	Pancreas	Pancrea
8	chr10:1326600-1329600	Weak transcription	NHEK	skin
9	chr10:1326600-1330000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:1327000-1330000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:1327600-1327800	Enhancers	Brain Anterior Caudate	brain
12	chr10:1327600-1328200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:1327600-1328600	Enhancers	Fetal Stomach	stomach
14	chr10:1327800-1328000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:1327800-1329200	Weak transcription	Brain Anterior Caudate	brain
16	chr10:1328000-1330000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:1328200-1334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:1328800-1329200	Enhancers	Brain Cingulate Gyrus	brain
19	chr10:1328800-1330600	Enhancers	Brain Angular Gyrus	brain
20	chr10:1328800-1332800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:1329200-1329400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:1329200-1331000	Enhancers	Brain Anterior Caudate	brain
23	chr10:1329200-1352600	Weak transcription	Right Atrium	heart
24	chr10:1329400-1331000	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:1329400-1331000	Enhancers	Brain Substantia Nigra	brain
26	chr10:1329600-1330400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:1329600-1330600	Enhancers	HSMMtube	muscle
28	chr10:1329600-1330800	Enhancers	Brain Hippocampus Middle	brain
29	chr10:1329600-1330800	Enhancers	HSMM	muscle
30	chr10:1329600-1331000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr10:1329600-1331800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:1329600-1332000	Enhancers	NHEK	skin
33	chr10:1329600-1332800	Enhancers	Esophagus	oesophagus
34	chr10:1329800-1330000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:1329800-1330200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:1329800-1330600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:1329800-1331000	Enhancers	Primary T cells from cord blood	blood
38	chr10:1329800-1331200	Enhancers	Dnd41	blood
39	chr10:1330000-1330400	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr10:1330000-1330400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
41	chr10:1330000-1330400	Enhancers	Placenta Amnion	Placenta Amnion
42	chr10:1330000-1330600	Enhancers	Adipose Nuclei	Adipose
43	chr10:1330000-1330800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:1330000-1330800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr10:1330000-1330800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:1330000-1331000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:1330000-1331000	Enhancers	Fetal Thymus	thymus
48	chr10:1330000-1331600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:1330000-1331800	Enhancers	Spleen	Spleen
50	chr10:1330200-1330400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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