Variant report

Variant	nsv894744
Chromosome Location	chr10:1899620-1924785
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:1910694..1913328-chr10:1934835..1936567,2	MCF-7	breast:

Extended variants
information (count: 1064 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:1064 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10508219	chr10:1899620-1899621	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs78482723	chr10:1899629-1899630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs145821012	chr10:1899701-1899702	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs569118113	chr10:1899751-1899752	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs538254363	chr10:1899780-1899781	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs17157166	chr10:1899791-1899792	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs538647465	chr10:1899811-1899812	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs568716143	chr10:1899817-1899818	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370177019	chr10:1899829-1899830	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs148996013	chr10:1899894-1899895	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs147114336	chr10:1899897-1899898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs137901763	chr10:1899905-1899906	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs545444400	chr10:1900010-1900011	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs556230818	chr10:1900013-1900014	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs143463101	chr10:1900058-1900059	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs541828999	chr10:1900121-1900122	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs377429302	chr10:1900144-1900145	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs561555581	chr10:1900170-1900171	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs527577347	chr10:1900191-1900192	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs541387364	chr10:1900211-1900212	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs191408378	chr10:1900219-1900220	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs145857941	chr10:1900235-1900236	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs552357065	chr10:1900315-1900316	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs569356975	chr10:1900337-1900338	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs370634325	chr10:1900339-1900340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs183891117	chr10:1900352-1900353	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs187084505	chr10:1900380-1900381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs376364751	chr10:1900388-1900389	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs376294923	chr10:1900393-1900394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs570670254	chr10:1900398-1900399	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs7069333	chr10:1900400-1900401	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs578199694	chr10:1900418-1900419	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs576063847	chr10:1900419-1900420	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs17222084	chr10:1900434-1900435	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs368185702	chr10:1900441-1900442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs57027380	chr10:1900442-1900443	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs59954884	chr10:1900465-1900466	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs563582689	chr10:1900466-1900467	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs11250835	chr10:1900497-1900498	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs564388410	chr10:1900507-1900508	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs577884413	chr10:1900513-1900514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs114548906	chr10:1900543-1900544	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs369334522	chr10:1900562-1900563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs563371484	chr10:1900598-1900599	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs77120682	chr10:1900645-1900646	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs7082514	chr10:1900661-1900662	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs561700183	chr10:1900695-1900696	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs527687189	chr10:1900707-1900708	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs547649337	chr10:1900721-1900722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs570829850	chr10:1900772-1900773	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1895600-1912800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:1899400-1900000	Weak transcription	Brain Germinal Matrix	brain
3	chr10:1899600-1900000	Enhancers	Hela-S3	cervix
4	chr10:1900000-1900200	Enhancers	Brain Germinal Matrix	brain
5	chr10:1900200-1900600	Enhancers	Hela-S3	cervix
6	chr10:1900400-1901000	Enhancers	Gastric	stomach
7	chr10:1900400-1901200	Enhancers	Dnd41	blood
8	chr10:1913200-1913400	Enhancers	Fetal Intestine Large	intestine
9	chr10:1913800-1914000	Enhancers	Fetal Intestine Small	intestine
10	chr10:1915400-1917000	Enhancers	Fetal Intestine Large	intestine
11	chr10:1915800-1916600	Enhancers	Fetal Intestine Small	intestine
12	chr10:1916000-1917400	Enhancers	GM12878-XiMat	blood
13	chr10:1921400-1921800	Enhancers	Hela-S3	cervix
14	chr10:1921800-1925000	Weak transcription	Hela-S3	cervix
15	chr10:1922800-1923200	Enhancers	Dnd41	blood
16	chr10:1923400-1926200	Enhancers	Fetal Intestine Large	intestine
17	chr10:1924000-1924400	Enhancers	Pancreas	Pancrea

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