Variant report

Variant	nsv894918
Chromosome Location	chr10:19390046-19466344
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:19399956..19400936-chr17:59652354..59652900,2	MCF-7	breast:
2	chr10:19082548..19083519-chr10:19457655..19458211,2	MCF-7	breast:
3	chr10:19458075..19458575-chr18:36304626..36305400,2	MCF-7	breast:
4	chr10:19419930..19422122-chr10:19424808..19427231,2	K562	blood:
5	chr10:19373201..19375040-chr10:19394247..19396869,2	K562	blood:
6	chr10:19424011..19426061-chr10:19435541..19437655,2	K562	blood:
7	chr10:19424011..19426061-chr10:19435541..19437655,2	K562	blood:
8	chr10:19399936..19400956-chr17:59651934..59652869,4	MCF-7	breast:
9	chr10:19399936..19400436-chr17:59489681..59490329,3	MCF-7	breast:
10	chr10:19419930..19422122-chr10:19424808..19427231,2	K562	blood:

No data

Extended variants
information (count: 3416 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:3416 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7069170	chr10:19390046-19390047	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs572586167	chr10:19390069-19390070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs202161061	chr10:19390085-19390086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs371559989	chr10:19390108-19390109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs185824085	chr10:19390149-19390150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs58485183	chr10:19390178-19390179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs373399154	chr10:19390179-19390180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552341364	chr10:19390182-19390183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10692054	chr10:19390188-19390189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs34397417	chr10:19390189-19390190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs397780078	chr10:19390190-19390191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs376842720	chr10:19390273-19390274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs576802400	chr10:19390316-19390317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs10740842	chr10:19390332-19390333	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs11008482	chr10:19390344-19390345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547886248	chr10:19390356-19390357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190296589	chr10:19390385-19390386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs112499339	chr10:19390393-19390394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574124380	chr10:19390499-19390500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs369659059	chr10:19390514-19390515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs56094583	chr10:19390536-19390537	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs111218099	chr10:19390537-19390538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532865248	chr10:19390577-19390578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs185962240	chr10:19390585-19390586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10740843	chr10:19390594-19390595	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs10740844	chr10:19390657-19390658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549033074	chr10:19390675-19390676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs111208128	chr10:19390754-19390755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs184063122	chr10:19390790-19390791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs35661443	chr10:19390881-19390882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs191072436	chr10:19390905-19390906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs147995680	chr10:19390912-19390913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11008484	chr10:19390932-19390933	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs112990623	chr10:19390979-19390980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201371452	chr10:19391002-19391003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113814881	chr10:19391003-19391004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs558168349	chr10:19391022-19391023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576533875	chr10:19391029-19391030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs112357383	chr10:19391040-19391041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs151313144	chr10:19391061-19391062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs555751972	chr10:19391143-19391144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs574286456	chr10:19391150-19391151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs140599768	chr10:19391206-19391207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs553194979	chr10:19391250-19391251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577307627	chr10:19391258-19391259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544735211	chr10:19391273-19391274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs114205372	chr10:19391346-19391347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565860910	chr10:19391435-19391436	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs530397001	chr10:19391442-19391443	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187747111	chr10:19391457-19391458	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19377400-19391800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19386000-19392600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19386600-19391400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:19391400-19393600	Strong transcription	Fetal Intestine Large	intestine
5	chr10:19391800-19392600	Strong transcription	Fetal Intestine Small	intestine
6	chr10:19392600-19393200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr10:19392600-19398000	Weak transcription	Fetal Intestine Small	intestine
8	chr10:19393200-19398000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:19393600-19395400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:19397800-19398000	ZNF genes & repeats	Fetal Intestine Large	intestine
11	chr10:19398000-19398800	Strong transcription	Fetal Intestine Small	intestine
12	chr10:19398000-19399400	Strong transcription	Duodenum Mucosa	Duodenum
13	chr10:19398000-19399600	Strong transcription	Fetal Intestine Large	intestine
14	chr10:19398600-19399000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr10:19398600-19399800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:19398800-19401000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:19398800-19403200	Weak transcription	Fetal Intestine Small	intestine
18	chr10:19399000-19399800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:19399000-19400400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:19399000-19400600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:19399200-19400600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:19399400-19400800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:19399400-19403200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:19399600-19401200	Weak transcription	Fetal Intestine Large	intestine
25	chr10:19399800-19401000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr10:19400000-19401000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:19400200-19401000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:19400200-19401600	Enhancers	Brain Germinal Matrix	brain
29	chr10:19401200-19401600	Strong transcription	Fetal Intestine Large	intestine
30	chr10:19401600-19403200	Weak transcription	Fetal Intestine Large	intestine
31	chr10:19403200-19404000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr10:19403200-19404400	Strong transcription	Fetal Intestine Small	intestine
33	chr10:19403200-19404800	Strong transcription	Fetal Intestine Large	intestine
34	chr10:19404000-19412800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:19404400-19411200	Weak transcription	Fetal Intestine Small	intestine
36	chr10:19404800-19410400	Weak transcription	Fetal Intestine Large	intestine
37	chr10:19407000-19408200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr10:19407200-19409000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr10:19407400-19409000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr10:19407400-19409400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr10:19407600-19407800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:19407600-19409000	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:19407800-19408000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr10:19407800-19408000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr10:19407800-19409000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr10:19407800-19409000	Enhancers	H9 Cell Line	embryonic stem cell
47	chr10:19408000-19408200	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr10:19408000-19408200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
49	chr10:19408000-19408400	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr10:19408000-19408600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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