Variant report

Variant	nsv894988
Chromosome Location	chr10:28337570-28410989
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:28372312..28376657-chr10:28391120..28396968,5	K562	blood:
2	chr10:28372312..28376657-chr10:28391120..28396968,5	K562	blood:
3	chr10:28332388..28334708-chr10:28335974..28338490,2	K562	blood:
4	chr10:28406473..28409563-chr10:28410652..28413187,3	MCF-7	breast:
5	chr10:28362265..28365237-chr10:28365253..28367161,2	K562	blood:
6	chr10:28384110..28385653-chr10:28390069..28392151,2	MCF-7	breast:
7	chr10:28384110..28385653-chr10:28390069..28392151,2	MCF-7	breast:
8	chr10:28387058..28389693-chr6:27776467..27779114,2	MCF-7	breast:
9	chr10:28397069..28398753-chr10:28400190..28402343,2	K562	blood:
10	chr10:28397069..28398753-chr10:28400190..28402343,2	K562	blood:
11	chr10:28406473..28409563-chr10:28410652..28413187,3	MCF-7	breast:
12	chr10:28362265..28365237-chr10:28365253..28367161,2	K562	blood:
13	chr10:28364402..28367665-chr10:28377622..28380231,3	MCF-7	breast:
14	chr10:28329005..28330814-chr10:28337139..28340091,2	K562	blood:
15	chr10:28364402..28367665-chr10:28377622..28380231,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAB18-2	chr10:28338321-28338544	ENSG00000233472.1

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	MPP7	hsa-miR-32-5p	chr10:28342051-28342072

Variant related genes	Relation type
ENSG00000203813	chromatin interactions

Extended variants
information (count: 2674 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:2674 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386742307	chr10:28337570-28337571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs12266822	chr10:28337571-28337572	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs10826389	chr10:28337574-28337575	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs561595074	chr10:28337587-28337588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs531897406	chr10:28337588-28337589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs550581190	chr10:28337589-28337590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568759402	chr10:28337606-28337607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs144431774	chr10:28337665-28337666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs202159746	chr10:28337722-28337723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs76020303	chr10:28337734-28337735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs139805727	chr10:28337783-28337784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs533938968	chr10:28337796-28337797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12268477	chr10:28337867-28337868	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs567578980	chr10:28337870-28337871	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs74720807	chr10:28337872-28337873	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs189038917	chr10:28337876-28337877	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs556562248	chr10:28337894-28337895	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs75482547	chr10:28337908-28337909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs117301204	chr10:28337975-28337976	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs553822684	chr10:28337996-28337997	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs572323528	chr10:28338011-28338012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs11006812	chr10:28338018-28338019	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs12246891	chr10:28338027-28338028	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs1857619	chr10:28338057-28338058	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs137969137	chr10:28338117-28338118	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs145292811	chr10:28338146-28338147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs114531230	chr10:28338151-28338152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs12268684	chr10:28338180-28338181	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs147627935	chr10:28338220-28338221	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs12268698	chr10:28338265-28338266	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs190655060	chr10:28338269-28338270	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs182832899	chr10:28338272-28338273	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs187110421	chr10:28338295-28338296	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs191761279	chr10:28338323-28338324	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs1857618	chr10:28338344-28338345	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs545570470	chr10:28338367-28338368	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs72801855	chr10:28338370-28338371	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs12268764	chr10:28338372-28338373	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs538614137	chr10:28338454-28338455	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs553736891	chr10:28338523-28338524	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs553642111	chr10:28338603-28338604	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs140509953	chr10:28338658-28338659	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs536347251	chr10:28338692-28338693	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs546699416	chr10:28338701-28338702	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs184731664	chr10:28338721-28338722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs544114300	chr10:28338736-28338737	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs565402594	chr10:28338737-28338738	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs11006813	chr10:28338754-28338755	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs577595669	chr10:28338760-28338761	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs560039191	chr10:28338816-28338817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	22341455	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:802 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28330000-28345000	Weak transcription	Pancreas	Pancrea
2	chr10:28331200-28345000	Weak transcription	Aorta	Aorta
3	chr10:28334200-28341200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:28334800-28341800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:28335000-28345800	Weak transcription	Brain Angular Gyrus	brain
6	chr10:28335600-28345000	Weak transcription	Fetal Stomach	stomach
7	chr10:28336200-28349400	Weak transcription	Gastric	stomach
8	chr10:28336400-28346000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:28336600-28345600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:28336800-28346600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:28337000-28339400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:28337200-28339400	Weak transcription	Primary T cells from cord blood	blood
13	chr10:28337400-28341800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:28337400-28342600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:28337400-28347400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:28337600-28342400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr10:28337800-28338600	Enhancers	NHDF-Ad	bronchial
18	chr10:28337800-28345000	Weak transcription	Fetal Intestine Small	intestine
19	chr10:28337800-28346000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:28338200-28338800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:28338200-28345000	Weak transcription	Left Ventricle	heart
22	chr10:28338400-28338800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:28338400-28345000	Weak transcription	Esophagus	oesophagus
24	chr10:28338600-28342600	Weak transcription	NHDF-Ad	bronchial
25	chr10:28338800-28341800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:28338800-28342400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:28339000-28345000	Weak transcription	Lung	lung
28	chr10:28339400-28339800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:28339400-28339800	Strong transcription	Primary T cells from cord blood	blood
30	chr10:28339400-28340800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:28339800-28342400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:28339800-28345000	Weak transcription	Primary T cells from cord blood	blood
33	chr10:28340200-28342400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:28340800-28342400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:28341200-28350000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr10:28341200-28377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr10:28341400-28341600	Enhancers	Rectal Smooth Muscle	rectum
38	chr10:28341400-28346400	Weak transcription	Spleen	Spleen
39	chr10:28341600-28342600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:28341800-28348600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:28341800-28349000	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:28341800-28349800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr10:28342200-28345000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:28342400-28342600	Enhancers	Stomach Smooth Muscle	stomach
45	chr10:28342400-28342600	Weak transcription	HSMMtube	muscle
46	chr10:28342400-28342800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:28342400-28343000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:28342400-28343000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:28342400-28343200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:28342400-28343400	Strong transcription	Primary T helper cells PMA-I stimulated	--

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