Variant report

Variant	nsv895431
Chromosome Location	chr10:55898144-55955444
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:55908092..55910671-chr10:55913950..55916622,2	MCF-7	breast:
2	chr10:55908092..55910671-chr10:55913950..55916622,2	MCF-7	breast:
3	10:55527193-55535408..10:55949104-55956834	K562	blood:

Extended variants
information (count: 628 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:628 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4447073	chr10:55898144-55898145	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs185694083	chr10:55898175-55898176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs574280009	chr10:55898176-55898177	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs549172110	chr10:55898211-55898212	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs541971357	chr10:55898279-55898280	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs189056771	chr10:55898285-55898286	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs553589995	chr10:55898322-55898323	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs553547659	chr10:55898324-55898325	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs573137803	chr10:55898350-55898351	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs71461220	chr10:55898354-55898355	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs544684252	chr10:55898377-55898378	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs72797053	chr10:55898403-55898404	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs574886610	chr10:55898407-55898408	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs545713625	chr10:55898502-55898503	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs374717954	chr10:55898516-55898517	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs72797054	chr10:55898537-55898538	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs369378426	chr10:55898549-55898550	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs12265459	chr10:55898586-55898587	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs192742764	chr10:55898596-55898597	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs575901346	chr10:55898599-55898600	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs183915387	chr10:55898616-55898617	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs532393563	chr10:55898631-55898632	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs543426964	chr10:55898632-55898633	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs571779847	chr10:55898672-55898673	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs537397584	chr10:55898673-55898674	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs139959048	chr10:55898708-55898709	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs550975089	chr10:55898709-55898710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs371048661	chr10:55898712-55898713	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs567828845	chr10:55898721-55898722	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs561592713	chr10:55898728-55898729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs528938257	chr10:55898732-55898733	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs188643981	chr10:55898751-55898752	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs566722866	chr10:55898779-55898780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs12265582	chr10:55898799-55898800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs538888357	chr10:55898819-55898820	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs552094202	chr10:55898829-55898830	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs181542072	chr10:55898883-55898884	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs185716517	chr10:55898901-55898902	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs7921048	chr10:55898919-55898920	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs574377640	chr10:55898935-55898936	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs540518231	chr10:55898968-55898969	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs11004091	chr10:55898980-55898981	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs11004092	chr10:55899011-55899012	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs36102103	chr10:55899016-55899017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs559117123	chr10:55899039-55899040	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs11004093	chr10:55899053-55899054	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs147978777	chr10:55899061-55899062	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs190264126	chr10:55899063-55899064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs551343306	chr10:55899075-55899076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs113447617	chr10:55899117-55899118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Colorectal cancer	16774939	CNVD
Autism	20858243	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	20164919	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55897200-55898400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55897400-55898600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr10:55898600-55899800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr10:55900200-55900400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:55900400-55900800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:55919600-55920200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:55920200-55923000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:55926000-55926200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:55926200-55926800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:55926200-55932400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:55926800-55929000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:55929000-55929400	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr10:55929000-55930600	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:55930600-55932200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:55932200-55932600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:55932400-55932600	Enhancers	HUES6 Cell Line	embryonic stem cell

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