Variant report

Variant	nsv895481
Chromosome Location	chr10:57128289-57207096
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:57177168..57179759-chr10:57181346..57183496,2	K562	blood:
2	chr10:57128438..57131267-chr10:57136615..57139314,2	K562	blood:
3	chr10:57154707..57155371-chr10:83749526..83750393,2	MCF-7	breast:
4	chr10:57177168..57179759-chr10:57181346..57183496,2	K562	blood:
5	chr10:57128438..57131267-chr10:57136615..57139314,2	K562	blood:

Extended variants
information (count: 1083 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:1083 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386744051	chr10:57128289-57128290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs1992820	chr10:57128307-57128308	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs568202936	chr10:57128319-57128320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114476341	chr10:57128428-57128429	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs547244582	chr10:57128453-57128454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs544172980	chr10:57128483-57128484	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs566973901	chr10:57128507-57128508	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs539188393	chr10:57128583-57128584	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs562476061	chr10:57128614-57128615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs558995696	chr10:57128624-57128625	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs569487309	chr10:57128625-57128626	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs187650220	chr10:57128632-57128633	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs554531678	chr10:57128638-57128639	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs574625357	chr10:57128670-57128671	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs540306125	chr10:57128696-57128697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs544383305	chr10:57128721-57128722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs568058871	chr10:57128771-57128772	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs60906060	chr10:57128793-57128794	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs576977525	chr10:57128815-57128816	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs372194711	chr10:57128822-57128823	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs78194590	chr10:57128840-57128841	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs562689190	chr10:57128862-57128863	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs576279473	chr10:57128863-57128864	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs529960466	chr10:57128879-57128880	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs540718247	chr10:57128881-57128882	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs115434768	chr10:57128954-57128955	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs527252082	chr10:57128967-57128968	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs547530316	chr10:57129037-57129038	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs149274618	chr10:57129053-57129054	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs191464339	chr10:57129230-57129231	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs564464704	chr10:57129291-57129292	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs569488533	chr10:57129333-57129334	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs538132033	chr10:57129337-57129338	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs533078653	chr10:57129343-57129344	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs114585916	chr10:57129349-57129350	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs73255754	chr10:57129447-57129448	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs553980662	chr10:57129459-57129460	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs577266985	chr10:57129489-57129490	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs539297687	chr10:57129513-57129514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs546486171	chr10:57129534-57129535	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs182173314	chr10:57129542-57129543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs148357100	chr10:57129543-57129544	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs141512048	chr10:57129587-57129588	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs367608904	chr10:57129595-57129596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs371838285	chr10:57129652-57129653	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs548001606	chr10:57129653-57129654	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs561930720	chr10:57129702-57129703	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs73255758	chr10:57129722-57129723	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs188295036	chr10:57129760-57129761	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs75320884	chr10:57129777-57129778	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Acute myeloid leukemia	20962326	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57125600-57129800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:57128400-57132600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:57128800-57130800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:57129400-57130400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:57129400-57130600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:57129600-57130800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:57129800-57130200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:57130200-57130800	Enhancers	NHDF-Ad	bronchial
9	chr10:57130800-57133400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:57130800-57134600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:57130800-57135400	Weak transcription	NHDF-Ad	bronchial
12	chr10:57132600-57134000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:57133400-57135600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:57134000-57134600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:57134000-57135800	Enhancers	HUVEC	blood vessel
16	chr10:57134600-57134800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:57134600-57135000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:57134800-57135000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:57135000-57135200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:57135000-57135200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:57135200-57135400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:57135200-57135400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:57135200-57135600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:57135400-57135600	Enhancers	NHDF-Ad	bronchial
25	chr10:57135400-57136800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:57135600-57140200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:57136800-57137800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:57138400-57138600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:57140200-57142800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr10:57140400-57140800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:57147200-57147600	Enhancers	Fetal Heart	heart
32	chr10:57147400-57148000	Enhancers	Fetal Brain Female	brain
33	chr10:57153400-57153600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:57153600-57157600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:57154200-57155400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:57154400-57155600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr10:57154600-57154800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:57154600-57155200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:57154800-57157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:57155000-57155400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr10:57155000-57155600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr10:57155200-57159800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:57155400-57159800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:57155400-57160000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:57155600-57157800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:57155600-57160000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr10:57156000-57159800	Weak transcription	HUVEC	blood vessel
48	chr10:57157000-57160800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:57157600-57158400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:57157800-57158200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links