Variant report

Variant	nsv895498
Chromosome Location	chr10:57646996-57788090
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:57714459..57717334-chr10:57718560..57721356,2	K562	blood:
2	chr10:57748719..57749535-chr10:57876195..57877022,4	MCF-7	breast:
3	chr10:57755531..57757629-chr14:20811264..20812832,2	MCF-7	breast:
4	chr10:57689140..57691906-chr10:57693909..57695941,3	K562	blood:
5	chr10:57689140..57691906-chr10:57693909..57695941,3	K562	blood:
6	chr10:57757077..57758579-chr10:57764722..57766777,2	MCF-7	breast:
7	chr10:57757077..57758579-chr10:57764722..57766777,2	MCF-7	breast:
8	chr10:57747558..57749260-chr10:57921516..57923175,2	MCF-7	breast:
9	chr10:57714459..57717334-chr10:57718560..57721356,2	K562	blood:
10	chr10:57717449..57719826-chr10:58113141..58115181,2	K562	blood:
11	chr10:57746592..57749487-chr10:57834078..57836757,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTRNR2L5-6	chr10:57742833-57743287	l_316_chr10:57728954-57743287_hela
2	lnc-MTRNR2L5-6	chr10:57732679-57732829	l_316_chr10:57728954-57743287_hela
3	lnc-MTRNR2L5-6	chr10:57728955-57729220	l_316_chr10:57728954-57743287_hela
4	lnc-MTRNR2L5-6	chr10:57742028-57742255	l_316_chr10:57728954-57743287_hela

No data

Variant related genes	Relation type
ENSG00000259001	chromatin interactions
ENSG00000129484	chromatin interactions

Extended variants
information (count: 796 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:796 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140157133	chr10:57655026-57655027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs184274680	chr10:57655039-57655040	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs549834844	chr10:57655076-57655077	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs188837129	chr10:57655113-57655114	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs532086335	chr10:57655153-57655154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs548612742	chr10:57655190-57655191	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs563487514	chr10:57655257-57655258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs568595020	chr10:57655285-57655286	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs181926278	chr10:57655349-57655350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs554204932	chr10:57655406-57655407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571644290	chr10:57655409-57655410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs115234523	chr10:57655440-57655441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs542814294	chr10:57655494-57655495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186109361	chr10:57655519-57655520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs575921031	chr10:57655586-57655587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs542066303	chr10:57655622-57655623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528673374	chr10:57655638-57655639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs555378014	chr10:57655657-57655658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs572174494	chr10:57655681-57655682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs145687868	chr10:57655715-57655716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs564152254	chr10:57655733-57655734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs533086066	chr10:57655748-57655749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs543434647	chr10:57655795-57655796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568505488	chr10:57655808-57655809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs529270203	chr10:57655823-57655824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563236098	chr10:57655857-57655858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs74136721	chr10:57655870-57655871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs548838574	chr10:57655924-57655925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs562259998	chr10:57655959-57655960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs527870735	chr10:57656037-57656038	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547599995	chr10:57656098-57656099	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs117778141	chr10:57656128-57656129	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs376772474	chr10:57656183-57656184	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs549870383	chr10:57656201-57656202	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs189478982	chr10:57656209-57656210	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs147707449	chr10:57656239-57656240	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs72790963	chr10:57656324-57656325	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs117328868	chr10:57656338-57656339	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs180846754	chr10:57656339-57656340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs12258760	chr10:57656358-57656359	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs569867200	chr10:57656382-57656383	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs558029299	chr10:57656388-57656389	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs577923170	chr10:57656389-57656390	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs543498890	chr10:57656421-57656422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs537393331	chr10:57656428-57656429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs142548980	chr10:57656430-57656431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs77749328	chr10:57656445-57656446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs542292580	chr10:57656462-57656463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs151273871	chr10:57656473-57656474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs527707482	chr10:57656497-57656498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD
Cancer	20164919	CNVD
Schizophrenia	18511947	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57655000-57655200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr10:57655000-57655200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:57655200-57655400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:57655400-57657600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:57655400-57658400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:57656000-57656400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:57656400-57656800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:57656600-57657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:57656800-57657000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr10:57656800-57657400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:57656800-57657400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:57656800-57658000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:57656800-57658200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr10:57656800-57658200	Enhancers	Fetal Stomach	stomach
15	chr10:57657000-57657200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:57657200-57657600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:57657200-57657600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:57657200-57658000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:57657200-57658400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:57657200-57658800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:57657400-57658400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr10:57657400-57659200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:57657400-57659400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:57657600-57657800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:57657600-57657800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr10:57657600-57657800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr10:57657600-57658800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:57657600-57659800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:57657800-57658000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:57657800-57658000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr10:57657800-57658200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr10:57657800-57658400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr10:57658000-57658200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr10:57658000-57658400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr10:57658000-57659200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:57658000-57659400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:57658200-57658400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr10:57658200-57659000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:57658200-57659000	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr10:57658400-57658600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:57658400-57659000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:57658400-57659200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr10:57658400-57659800	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr10:57658400-57660000	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr10:57658600-57659400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:57658800-57659000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:57658800-57659200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr10:57658800-57659400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr10:57658800-57659400	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr10:57659000-57659400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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