Variant report

Variant	nsv895510
Chromosome Location	chr10:58602006-58672533
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:58621047..58621938-chr15:50576510..50577380,2	MCF-7	breast:

Extended variants
information (count: 988 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:988 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12572501	chr10:58604639-58604640	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs137864063	chr10:58604649-58604650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs141638563	chr10:58604655-58604656	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs150897446	chr10:58604687-58604688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs75889166	chr10:58604699-58604700	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs527341859	chr10:58604700-58604701	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs192538344	chr10:58604712-58604713	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs139399957	chr10:58604753-58604754	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs149650042	chr10:58604776-58604777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs191673144	chr10:58604777-58604778	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs571428427	chr10:58604799-58604800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs150192090	chr10:58604907-58604908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs375918061	chr10:58604929-58604930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs538829645	chr10:58604935-58604936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs11595386	chr10:58604938-58604939	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs369878229	chr10:58604940-58604941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs138040204	chr10:58604941-58604942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs74139498	chr10:58604944-58604945	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs375491193	chr10:58604958-58604959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs146121237	chr10:58604981-58604982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs184583932	chr10:58604984-58604985	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs554917088	chr10:58605016-58605017	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs576151742	chr10:58605056-58605057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs543464921	chr10:58605066-58605067	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs139559702	chr10:58605167-58605168	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs532608230	chr10:58605212-58605213	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs541609259	chr10:58605223-58605224	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs192244062	chr10:58605237-58605238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs530402608	chr10:58605306-58605307	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs548717639	chr10:58605310-58605311	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567239315	chr10:58605327-58605328	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs573451194	chr10:58605331-58605332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs117662167	chr10:58605364-58605365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs571365000	chr10:58605392-58605393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs78487104	chr10:58605393-58605394	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs547556878	chr10:58605403-58605404	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs16909576	chr10:58605407-58605408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs534189232	chr10:58605411-58605412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs185030987	chr10:58605466-58605467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs371330953	chr10:58605503-58605504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs77304342	chr10:58605505-58605506	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs189522794	chr10:58605531-58605532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs143649676	chr10:58605542-58605543	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs78081798	chr10:58605564-58605565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs558671662	chr10:58605598-58605599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs570983192	chr10:58605603-58605604	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs538044870	chr10:58605672-58605673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs146820502	chr10:58605693-58605694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs148500156	chr10:58605741-58605742	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs559861141	chr10:58605776-58605777	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58604600-58605800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:58604800-58606200	Enhancers	Adipose Nuclei	Adipose
3	chr10:58618600-58636000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:58621800-58622200	Enhancers	Fetal Lung	lung
5	chr10:58626800-58627400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:58636000-58636200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:58636200-58639800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:58636400-58637000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:58639400-58640200	Enhancers	Fetal Lung	lung
10	chr10:58640200-58640800	Flanking Active TSS	Fetal Lung	lung
11	chr10:58640400-58640800	Enhancers	Adipose Nuclei	Adipose
12	chr10:58640400-58641200	Enhancers	Ovary	ovary
13	chr10:58640600-58641200	Enhancers	Fetal Stomach	stomach
14	chr10:58640800-58642000	Enhancers	Fetal Lung	lung
15	chr10:58641000-58641600	Enhancers	Fetal Kidney	kidney
16	chr10:58655200-58655800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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