Variant report

Variant	nsv895514
Chromosome Location	chr10:58730014-58772800
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 167 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:167 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530017848	chr10:58734612-58734613	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs548545080	chr10:58734663-58734664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs149284098	chr10:58734691-58734692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs117460760	chr10:58734768-58734769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs12414965	chr10:58734786-58734787	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs183954955	chr10:58734790-58734791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs189121714	chr10:58734791-58734792	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs76171403	chr10:58734796-58734797	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs540682973	chr10:58736651-58736652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs562161187	chr10:58736675-58736676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs147719509	chr10:58736685-58736686	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs372309708	chr10:58736760-58736761	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs369100398	chr10:58736784-58736785	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs188259760	chr10:58736828-58736829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs533439199	chr10:58736831-58736832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs551885301	chr10:58736839-58736840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs73281183	chr10:58736867-58736868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs376460773	chr10:58736872-58736873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs374954421	chr10:58736883-58736884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561190841	chr10:58736886-58736887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs185494692	chr10:58736896-58736897	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs139770483	chr10:58736902-58736903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs535680403	chr10:58736903-58736904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188026188	chr10:58736935-58736936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs140883147	chr10:58736944-58736945	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs191272466	chr10:58736983-58736984	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs571573337	chr10:58769407-58769408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs537735282	chr10:58769408-58769409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs572709212	chr10:58769428-58769429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs563890047	chr10:58769454-58769455	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs369192016	chr10:58769455-58769456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs138673728	chr10:58769470-58769471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs375892003	chr10:58769532-58769533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs544631810	chr10:58769598-58769599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs369071076	chr10:58769602-58769603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs562717991	chr10:58769620-58769621	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs577942315	chr10:58769624-58769625	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs7894237	chr10:58769660-58769661	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs35272934	chr10:58769679-58769680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs560530894	chr10:58769775-58769776	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs117407735	chr10:58769790-58769791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs148202799	chr10:58769800-58769801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs541359363	chr10:58769824-58769825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs181681153	chr10:58769833-58769834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs536403110	chr10:58769853-58769854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs141162093	chr10:58769889-58769890	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs559875333	chr10:58769920-58769921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs34851794	chr10:58770045-58770046	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs568773418	chr10:58770085-58770086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs532898708	chr10:58770094-58770095	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58734600-58734800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:58736600-58737000	Enhancers	Fetal Heart	heart
3	chr10:58769400-58772000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:58770000-58770200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:58770400-58773800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:58772000-58776200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:58772800-58774600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links