Variant report

Variant	nsv895515
Chromosome Location	chr10:58802422-58913651
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:58885374..58887771-chr10:58890005..58892664,2	MCF-7	breast:
2	chr10:58851859..58854706-chr10:58856434..58858287,2	K562	blood:
3	chr10:58885374..58887771-chr10:58890005..58892664,2	MCF-7	breast:
4	chr10:58887742..58890502-chr10:58913371..58916213,2	MCF-7	breast:
5	chr10:58887742..58890502-chr10:58913371..58916213,2	MCF-7	breast:
6	chr10:58851859..58854706-chr10:58856434..58858287,2	K562	blood:
7	chr10:58846604..58849406-chr10:58852158..58853695,2	MCF-7	breast:
8	chr10:58846604..58849406-chr10:58852158..58853695,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-2	chr10:58867073-58867228	XLOC_008829
2	lnc-ZWINT-2	chr10:58868384-58868602	XLOC_008829
3	lnc-ZWINT-3	chr10:58872623-58873152	XLOC_008830

No data

Variant related genes	Relation type
C22orf13	miRNA target sites

Extended variants
information (count: 2550 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:2550 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529667608	chr10:58806844-58806845	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs146178911	chr10:58806852-58806853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs185831012	chr10:58806887-58806888	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs540185719	chr10:58806914-58806915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs190640261	chr10:58806974-58806975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs529175990	chr10:58806987-58806988	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs182457857	chr10:58806991-58806992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs74138508	chr10:58806993-58806994	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs533507775	chr10:58807076-58807077	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs368971728	chr10:58807096-58807097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs551852216	chr10:58807134-58807135	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs566983539	chr10:58807170-58807171	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs527873340	chr10:58807209-58807210	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs111399621	chr10:58807249-58807250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs549279772	chr10:58807322-58807323	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs567639502	chr10:58807394-58807395	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs34686079	chr10:58807444-58807445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs77140391	chr10:58807452-58807453	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs35900648	chr10:58807454-58807455	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs79543649	chr10:58807456-58807457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs386371485	chr10:58807458-58807459	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs61046220	chr10:58807459-58807460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs560227920	chr10:58807462-58807463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs74711094	chr10:58807494-58807495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs79268130	chr10:58807516-58807517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs546472988	chr10:58807520-58807521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs539203811	chr10:58807553-58807554	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs117036362	chr10:58807564-58807565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs188343112	chr10:58807569-58807570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs540444387	chr10:58807587-58807588	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs141642567	chr10:58807588-58807589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs190641681	chr10:58807612-58807613	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs531545328	chr10:58807691-58807692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs544509767	chr10:58807695-58807696	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs562918780	chr10:58807800-58807801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs117200371	chr10:58807837-58807838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs550215375	chr10:58807982-58807983	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs545208859	chr10:58808011-58808012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs150895806	chr10:58808013-58808014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs139416611	chr10:58808031-58808032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549554460	chr10:58808053-58808054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566599062	chr10:58808224-58808225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs151086161	chr10:58808254-58808255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs182885857	chr10:58808337-58808338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs531920277	chr10:58808366-58808367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs145505641	chr10:58808472-58808473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs373021105	chr10:58808502-58808503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs79817949	chr10:58808507-58808508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs551405698	chr10:58808516-58808517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs376846788	chr10:58808553-58808554	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	20164919	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58806800-58808000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:58807200-58807400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:58808000-58808400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:58808400-58809800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:58810200-58810400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:58813200-58813400	ZNF genes & repeats	Pancreas	Pancrea
7	chr10:58814600-58815200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:58827800-58828200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:58851400-58851800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:58851400-58851800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:58851400-58852000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:58851400-58852000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:58854000-58863600	Weak transcription	Right Atrium	heart
14	chr10:58854600-58855000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:58854800-58856200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:58854800-58856400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:58855800-58856200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
18	chr10:58856000-58856200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chr10:58856200-58856400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr10:58856200-58856600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:58856200-58863000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:58856400-58861400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:58856400-58862600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:58857200-58861400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:58857800-58859000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:58858400-58858600	Enhancers	Fetal Lung	lung
27	chr10:58858600-58858800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:58858800-58859800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:58859800-58860000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:58860000-58861400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:58861000-58863400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr10:58861400-58861600	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr10:58861400-58862000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:58861400-58863200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:58861400-58863200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr10:58861400-58863400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:58861400-58863400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:58861400-58863400	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr10:58861400-58863600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:58861600-58862600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr10:58861600-58863400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr10:58862000-58862200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:58862000-58862200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:58862000-58862400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:58862200-58862800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:58862200-58867400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:58862400-58863200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:58862600-58863200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr10:58862600-58863200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:58862800-58863400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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