Variant report

Variant	nsv895530
Chromosome Location	chr10:58885646-58937708
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:58887742..58890502-chr10:58913371..58916213,2	MCF-7	breast:
2	chr10:58885374..58887771-chr10:58890005..58892664,2	MCF-7	breast:
3	chr10:58887742..58890502-chr10:58913371..58916213,2	MCF-7	breast:
4	chr10:58885374..58887771-chr10:58890005..58892664,2	MCF-7	breast:

Extended variants
information (count: 1772 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:1772 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs924792	chr10:58885646-58885647	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs548924406	chr10:58885649-58885650	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs567266426	chr10:58885661-58885662	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186058897	chr10:58885669-58885670	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549737616	chr10:58885705-58885706	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs577039779	chr10:58885717-58885718	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs190081228	chr10:58885726-58885727	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs545999861	chr10:58885737-58885738	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs145580932	chr10:58885796-58885797	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs554103547	chr10:58885797-58885798	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs377639840	chr10:58885814-58885815	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs572320781	chr10:58885823-58885824	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs150252193	chr10:58885834-58885835	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs61104781	chr10:58885874-58885875	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs79966810	chr10:58885878-58885879	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144462403	chr10:58885916-58885917	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs536550514	chr10:58885926-58885927	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs181298974	chr10:58885933-58885934	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs143280059	chr10:58885955-58885956	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs577022994	chr10:58885978-58885979	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143208264	chr10:58886010-58886011	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs559630107	chr10:58886014-58886015	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs79195945	chr10:58886058-58886059	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs16910227	chr10:58886062-58886063	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs118083450	chr10:58886072-58886073	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs531339747	chr10:58886161-58886162	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549892318	chr10:58886167-58886168	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs185857805	chr10:58886171-58886172	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs148751848	chr10:58886192-58886193	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs35264374	chr10:58886196-58886197	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532348773	chr10:58886207-58886208	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs118067078	chr10:58886225-58886226	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs146519969	chr10:58886278-58886279	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138381624	chr10:58886355-58886356	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs141907487	chr10:58886362-58886363	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs76653286	chr10:58886387-58886388	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537198801	chr10:58886416-58886417	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs558632567	chr10:58886463-58886464	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs576886727	chr10:58886466-58886467	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs143505990	chr10:58886598-58886599	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs139670065	chr10:58886599-58886600	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149772328	chr10:58886610-58886611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs542492485	chr10:58886619-58886620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146270820	chr10:58886631-58886632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs3104622	chr10:58886645-58886646	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs556685842	chr10:58886693-58886694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs543395685	chr10:58886738-58886739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs564979836	chr10:58886757-58886758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs191107559	chr10:58886830-58886831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs547632562	chr10:58886897-58886898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58885400-58886600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:58886600-58897200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:58893000-58893200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:58893000-58894400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:58893200-58893400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:58893200-58893400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:58893200-58893600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr10:58893200-58893600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:58893200-58893600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:58893200-58894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:58894400-58894600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:58895400-58895800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:58897200-58898000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:58898000-58899000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:58899000-58899800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:58899800-58902000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:58902000-58902800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:58902000-58903600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:58902400-58903400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:58902600-58903400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:58902800-58903200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:58903200-58903400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
23	chr10:58903200-58903400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:58903600-58906800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:58906800-58907200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:58907200-58907400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:58907400-58907800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:58921200-58921400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr10:58921200-58923200	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:58921400-58923000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:58923000-58923200	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr10:58923200-58924400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:58923400-58925000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:58924400-58924600	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr10:58924800-58926200	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr10:58925000-58925600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:58925000-58925800	Enhancers	H1 Cell Line	embryonic stem cell
38	chr10:58925000-58926400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:58925200-58925600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:58925400-58925600	ZNF genes & repeats	Lung	lung
41	chr10:58925400-58925800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr10:58925400-58926000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:58925600-58926000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:58925800-58926600	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr10:58926000-58926400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:58926400-58927200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:58926600-58927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:58927200-58928200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:58927800-58928800	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr10:58928200-58929000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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