Variant report

Variant	nsv895548
Chromosome Location	chr10:59158985-59210800
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:59162193..59163830-chr10:59170301..59171826,2	K562	blood:
2	chr10:59141917..59143760-chr10:59167909..59170297,2	K562	blood:
3	chr10:59173064..59175096-chr10:59176934..59178723,2	K562	blood:
4	chr10:59162193..59163830-chr10:59170301..59171826,2	K562	blood:
5	chr10:59173064..59175096-chr10:59176934..59178723,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12359659	chr10:59158985-59158986	Enhancers	n/a	n/a	Overlapped CNVs	mRNA abundance
2	rs190357935	chr10:59158991-59158992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs138653384	chr10:59159037-59159038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs551523060	chr10:59159072-59159073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs539441841	chr10:59159081-59159082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs114432127	chr10:59159082-59159083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs182957583	chr10:59159093-59159094	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs185278393	chr10:59159138-59159139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs376632154	chr10:59159146-59159147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs567833529	chr10:59159163-59159164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs11005787	chr10:59159175-59159176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs550611092	chr10:59159176-59159177	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs16910616	chr10:59180622-59180623	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs556873315	chr10:59180672-59180673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs16910621	chr10:59180681-59180682	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs545393675	chr10:59180696-59180697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs560689979	chr10:59180712-59180713	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs572562524	chr10:59180763-59180764	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539932099	chr10:59180778-59180779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561494455	chr10:59180789-59180790	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs35237959	chr10:59180839-59180840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs528838099	chr10:59180859-59180860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs543842228	chr10:59180908-59180909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs562162465	chr10:59180976-59180977	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs184564160	chr10:59180997-59180998	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533229679	chr10:59181004-59181005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs564987675	chr10:59181026-59181027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs59408213	chr10:59181049-59181050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs566619016	chr10:59181056-59181057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs201587163	chr10:59181061-59181062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs201870650	chr10:59181063-59181064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs201887605	chr10:59181069-59181070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs200836563	chr10:59181070-59181071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs386371494	chr10:59181077-59181078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs369265082	chr10:59181079-59181080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs527536306	chr10:59181118-59181119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs549496844	chr10:59181146-59181147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs199784224	chr10:59181176-59181177	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs187652889	chr10:59181198-59181199	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Schizophrenia	23813976	CNVD
Williams Syndrome	20824207	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59158800-59159200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:59180600-59181000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:59180800-59181200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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