Variant report

Variant	nsv895877
Chromosome Location	chr10:89884031-89905498
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89868617..89870229-chr10:89891624..89893252,2	K562	blood:
2	chr10:89872939..89875785-chr10:89888334..89891618,3	MCF-7	breast:
3	chr10:89890101..89893895-chr10:89894982..89898353,4	MCF-7	breast:
4	chr10:89882082..89884838-chr10:89886238..89888826,2	MCF-7	breast:
5	chr10:89880599..89883171-chr10:89889112..89891396,2	MCF-7	breast:
6	chr10:89882082..89884838-chr10:89886238..89888826,2	MCF-7	breast:
7	chr10:89623345..89624849-chr10:89890140..89891797,2	MCF-7	breast:
8	chr10:89894703..89896788-chr10:89907368..89909483,2	MCF-7	breast:
9	chr10:89890101..89893895-chr10:89894982..89898353,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000171862	chromatin interactions

Extended variants
information (count: 780 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:780 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11592115	chr10:89884031-89884032	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs576927099	chr10:89884039-89884040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149223957	chr10:89884048-89884049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs367763556	chr10:89884073-89884074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs574408540	chr10:89884127-89884128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs372753793	chr10:89884185-89884186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs386746297	chr10:89884420-89884421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs7071618	chr10:89884421-89884422	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs530519897	chr10:89884424-89884425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs545926877	chr10:89884442-89884443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs190057254	chr10:89884444-89884445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs142472207	chr10:89884451-89884452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs146842529	chr10:89884474-89884475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560070481	chr10:89884543-89884544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs530441672	chr10:89884583-89884584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs548285066	chr10:89884647-89884648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75294083	chr10:89884664-89884665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs537060276	chr10:89884671-89884672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs115166826	chr10:89884679-89884680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs77231574	chr10:89884703-89884704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534478114	chr10:89884715-89884716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111818695	chr10:89884783-89884784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552783456	chr10:89884809-89884810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7917661	chr10:89884938-89884939	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
25	rs535408844	chr10:89885025-89885026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs79044284	chr10:89885149-89885150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs116834618	chr10:89885156-89885157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs145299544	chr10:89885194-89885195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564172376	chr10:89885195-89885196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs573006928	chr10:89885233-89885234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs541614341	chr10:89885276-89885277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs560032561	chr10:89885288-89885289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530408147	chr10:89885318-89885319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs548823940	chr10:89885380-89885381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs4933470	chr10:89885385-89885386	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs137941772	chr10:89885420-89885421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs530905940	chr10:89885446-89885447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs369030140	chr10:89885494-89885495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs17420329	chr10:89885502-89885503	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs570598672	chr10:89885503-89885504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs534819828	chr10:89885504-89885505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs560855468	chr10:89885505-89885506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75454661	chr10:89885507-89885508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs375189993	chr10:89885519-89885520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs150094235	chr10:89885520-89885521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs138398945	chr10:89885582-89885583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs4933471	chr10:89885587-89885588	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs575473001	chr10:89885613-89885614	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs539402197	chr10:89885644-89885645	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs557494889	chr10:89885665-89885666	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	21569311	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Lung adenocarcinoma	17982442	CNVD

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89874000-89891400	Weak transcription	Left Ventricle	heart
2	chr10:89878800-89892200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:89879200-89896600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:89880800-89885600	Weak transcription	Dnd41	blood
5	chr10:89881000-89885600	Weak transcription	Fetal Thymus	thymus
6	chr10:89881000-89885600	Weak transcription	Thymus	Thymus
7	chr10:89881200-89885800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:89881200-89886200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:89881200-89903800	Weak transcription	Primary B cells from cord blood	blood
10	chr10:89881600-89886600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:89885600-89886000	Enhancers	Fetal Thymus	thymus
12	chr10:89885600-89886000	Enhancers	Thymus	Thymus
13	chr10:89885600-89886000	Enhancers	Dnd41	blood
14	chr10:89885800-89889200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:89886200-89887000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:89886400-89891400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:89886600-89887800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:89887000-89887800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr10:89887400-89887600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:89887400-89887600	Enhancers	Psoas Muscle	Psoas
21	chr10:89887400-89888000	Enhancers	HSMM	muscle
22	chr10:89887400-89889000	Enhancers	HSMMtube	muscle
23	chr10:89887400-89889200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:89887600-89888800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:89887600-89891400	Weak transcription	Psoas Muscle	Psoas
26	chr10:89887800-89889400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr10:89888600-89889400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:89888800-89891800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr10:89889200-89890800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:89889400-89891400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:89890800-89891200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:89890800-89892400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:89890800-89892400	Enhancers	HMEC	breast
34	chr10:89890800-89892400	Enhancers	NHEK	skin
35	chr10:89891000-89891600	Enhancers	Aorta	Aorta
36	chr10:89891000-89892200	Enhancers	Pancreas	Pancrea
37	chr10:89891000-89892600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:89891000-89892600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:89891200-89891800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr10:89891200-89892000	Enhancers	Adipose Nuclei	Adipose
41	chr10:89891400-89891600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr10:89891400-89891800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:89891400-89891800	Enhancers	Left Ventricle	heart
44	chr10:89891400-89892000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:89891400-89892000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:89891400-89892200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:89891400-89892200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:89891400-89892200	Enhancers	Colon Smooth Muscle	Colon
49	chr10:89891400-89892200	Enhancers	Psoas Muscle	Psoas
50	chr10:89891600-89891800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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