Variant report

Variant	nsv895892
Chromosome Location	chr10:93432632-93470167
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93460617..93462376-chr10:93465718..93467572,2	K562	blood:
2	chr10:93444232..93446401-chr10:93448282..93451081,3	K562	blood:
3	chr10:93403175..93404161-chr10:93453640..93454972,7	MCF-7	breast:
4	chr10:93440121..93442029-chr10:93445363..93447595,2	K562	blood:
5	chr10:93444389..93447006-chr10:93448004..93451081,3	K562	blood:
6	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:
7	chr10:93431074..93433600-chr10:93435217..93437331,2	MCF-7	breast:
8	chr10:93411652..93413648-chr10:93444195..93446402,2	MCF-7	breast:
9	chr10:93460617..93462376-chr10:93465718..93467572,2	K562	blood:
10	chr10:93463082..93465873-chr10:93466550..93468065,2	MCF-7	breast:
11	chr10:93311332..93312699-chr10:93453654..93454623,6	MCF-7	breast:
12	chr10:93452471..93454036-chr10:93456855..93459616,2	K562	blood:
13	chr10:93444797..93447256-chr10:93449806..93452574,3	MCF-7	breast:
14	chr10:93444232..93446401-chr10:93448282..93451081,3	K562	blood:
15	chr10:93444797..93447256-chr10:93449806..93452574,3	MCF-7	breast:
16	chr10:93431074..93433600-chr10:93435217..93437331,2	MCF-7	breast:
17	chr10:93444389..93447006-chr10:93448004..93451081,3	K562	blood:
18	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:
19	chr10:93463082..93465873-chr10:93466550..93468065,2	MCF-7	breast:
20	chr10:93429753..93431431-chr10:93432536..93434439,2	MCF-7	breast:
21	chr10:93440121..93442029-chr10:93445363..93447595,2	K562	blood:
22	chr10:93452471..93454036-chr10:93456855..93459616,2	K562	blood:
23	chr10:93057727..93058645-chr10:93453674..93454188,2	K562	blood:

No data

Extended variants
information (count: 1384 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:1384 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4933218	chr10:93432632-93432633	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs564258859	chr10:93432634-93432635	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs373543879	chr10:93432651-93432652	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs34332836	chr10:93432661-93432662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs187220482	chr10:93432685-93432686	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs75129653	chr10:93432747-93432748	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs540175978	chr10:93432811-93432812	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs559994020	chr10:93432818-93432819	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370913870	chr10:93432851-93432852	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs370397002	chr10:93432852-93432853	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs540406473	chr10:93432944-93432945	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs7923923	chr10:93432996-93432997	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs531392713	chr10:93433026-93433027	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs191732377	chr10:93433031-93433032	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs80178518	chr10:93433034-93433035	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs534129441	chr10:93433057-93433058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs374088318	chr10:93433067-93433068	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs554530626	chr10:93433105-93433106	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs183866168	chr10:93433125-93433126	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs375682863	chr10:93433170-93433171	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189532454	chr10:93433208-93433209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs536700491	chr10:93433278-93433279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576462043	chr10:93433290-93433291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs55825718	chr10:93433304-93433305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs547126316	chr10:93433337-93433338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs372809593	chr10:93433403-93433404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs140267999	chr10:93433473-93433474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs368206504	chr10:93433477-93433478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs558774120	chr10:93433514-93433515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs376666395	chr10:93433550-93433551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs577796077	chr10:93433564-93433565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540023252	chr10:93433636-93433637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7912945	chr10:93433640-93433641	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs34739750	chr10:93433658-93433659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs529124341	chr10:93433664-93433665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542220198	chr10:93433701-93433702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs192224906	chr10:93433703-93433704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531202669	chr10:93433721-93433722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs369070268	chr10:93433728-93433729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558961469	chr10:93433774-93433775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185817399	chr10:93433777-93433778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200524533	chr10:93433785-93433786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs190343547	chr10:93433812-93433813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547974039	chr10:93433828-93433829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs73323922	chr10:93433840-93433841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536898151	chr10:93433871-93433872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs549915579	chr10:93433925-93433926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs375370673	chr10:93433938-93433939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs55721159	chr10:93433991-93433992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs202113265	chr10:93434046-93434047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:370 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93427600-93448800	Weak transcription	Liver	Liver
4	chr10:93431400-93433200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:93431600-93432800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:93431600-93432800	Enhancers	HUVEC	blood vessel
7	chr10:93431600-93433000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:93431600-93433200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:93431800-93432800	Enhancers	NHDF-Ad	bronchial
10	chr10:93432200-93432800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:93432200-93432800	Enhancers	NHEK	skin
12	chr10:93432400-93432800	Enhancers	Hela-S3	cervix
13	chr10:93432400-93433000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:93432400-93433200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:93432400-93436200	Weak transcription	Psoas Muscle	Psoas
16	chr10:93432400-93442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:93432600-93435800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:93432600-93441400	Weak transcription	HSMM	muscle
19	chr10:93432600-93441400	Weak transcription	NHLF	lung
20	chr10:93432800-93437600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:93432800-93437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:93432800-93437600	Weak transcription	NHEK	skin
23	chr10:93433000-93437400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:93433000-93441200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:93433200-93437600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:93433200-93437800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:93435800-93436400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:93436400-93436800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:93436400-93441400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:93437400-93438000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:93437600-93438000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:93437600-93438000	Enhancers	NHEK	skin
33	chr10:93437600-93438200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:93437600-93438200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:93437800-93438200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:93438000-93438200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:93438000-93440000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:93438000-93440000	Weak transcription	NHEK	skin
39	chr10:93438000-93441200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:93438200-93440000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:93438200-93440000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:93438200-93440200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:93438200-93441400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:93439000-93439600	Enhancers	Fetal Intestine Large	intestine
45	chr10:93439200-93439400	Enhancers	Aorta	Aorta
46	chr10:93439200-93444600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
48	chr10:93440000-93440200	Enhancers	Brain Germinal Matrix	brain
49	chr10:93440000-93442000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:93440000-93442200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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