Variant report

Variant	nsv895903
Chromosome Location	chr10:96548132-96604273
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2947 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:2947 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78509641	chr10:96548132-96548133	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs557134888	chr10:96548141-96548142	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs57515602	chr10:96548142-96548143	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs539592718	chr10:96548159-96548160	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs553179596	chr10:96548160-96548161	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573106758	chr10:96548179-96548180	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs542113581	chr10:96548208-96548209	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs368766541	chr10:96548212-96548213	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs184472389	chr10:96548228-96548229	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs541896123	chr10:96548237-96548238	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs575086122	chr10:96548239-96548240	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs544207654	chr10:96548245-96548246	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145364542	chr10:96548270-96548271	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs370976691	chr10:96548272-96548273	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113903706	chr10:96548296-96548297	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs67120915	chr10:96548316-96548317	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs77436928	chr10:96548319-96548320	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs559506501	chr10:96548347-96548348	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200841794	chr10:96548421-96548422	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs528682398	chr10:96548448-96548449	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs548425629	chr10:96548456-96548457	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs150140106	chr10:96548473-96548474	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs57822910	chr10:96548490-96548491	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs541028023	chr10:96548542-96548543	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs550946599	chr10:96548583-96548584	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570782358	chr10:96548622-96548623	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549653015	chr10:96548645-96548646	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189578879	chr10:96548714-96548715	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs565267774	chr10:96548736-96548737	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs571251113	chr10:96548784-96548785	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs545770987	chr10:96548806-96548807	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs555335354	chr10:96548815-96548816	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575488996	chr10:96548837-96548838	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs544227556	chr10:96548843-96548844	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371304713	chr10:96548847-96548848	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs373408094	chr10:96548860-96548861	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs192432605	chr10:96548877-96548878	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs184544155	chr10:96548888-96548889	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs115338222	chr10:96548889-96548890	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs542010258	chr10:96548891-96548892	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562188025	chr10:96548951-96548952	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs188979133	chr10:96548953-96548954	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs375045837	chr10:96548960-96548961	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs180873189	chr10:96548966-96548967	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550537409	chr10:96548998-96548999	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs564469523	chr10:96549015-96549016	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs533387615	chr10:96549043-96549044	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138613753	chr10:96549061-96549062	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs186505600	chr10:96549067-96549068	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535997172	chr10:96549068-96549069	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96533000-96564600	Weak transcription	Gastric	stomach
2	chr10:96538000-96553400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:96545200-96549400	Strong transcription	Liver	Liver
4	chr10:96546000-96553600	Weak transcription	Fetal Intestine Large	intestine
5	chr10:96547800-96548600	Strong transcription	Duodenum Mucosa	Duodenum
6	chr10:96548600-96552800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:96549400-96550200	Weak transcription	Liver	Liver
8	chr10:96550200-96550400	Strong transcription	Liver	Liver
9	chr10:96550400-96552000	Weak transcription	Liver	Liver
10	chr10:96552000-96554600	Strong transcription	Liver	Liver
11	chr10:96552800-96554200	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:96553400-96554200	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr10:96553600-96554200	ZNF genes & repeats	Fetal Intestine Large	intestine
14	chr10:96554200-96560000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:96554200-96560000	Weak transcription	Fetal Intestine Small	intestine
16	chr10:96554200-96560400	Weak transcription	Fetal Intestine Large	intestine
17	chr10:96554600-96560000	Weak transcription	Liver	Liver
18	chr10:96560000-96560800	Genic enhancers	Liver	Liver
19	chr10:96560000-96561200	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr10:96560000-96562200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr10:96560400-96564600	Strong transcription	Fetal Intestine Large	intestine
22	chr10:96560800-96566200	Strong transcription	Liver	Liver
23	chr10:96561600-96562000	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr10:96562000-96563200	Weak transcription	Fetal Intestine Small	intestine
25	chr10:96562200-96563000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:96563000-96564400	Strong transcription	Duodenum Mucosa	Duodenum
27	chr10:96563200-96563600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:96563200-96563800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:96563200-96564400	Strong transcription	Fetal Intestine Small	intestine
30	chr10:96564400-96565400	Weak transcription	Fetal Intestine Small	intestine
31	chr10:96564400-96565600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:96564600-96565400	Weak transcription	Fetal Intestine Large	intestine
33	chr10:96565400-96565800	Strong transcription	Fetal Intestine Large	intestine
34	chr10:96565400-96565800	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr10:96565600-96565800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr10:96565800-96566000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
37	chr10:96565800-96569800	Weak transcription	Fetal Intestine Small	intestine
38	chr10:96565800-96581600	Weak transcription	Fetal Intestine Large	intestine
39	chr10:96566000-96580200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:96566200-96580200	Weak transcription	Liver	Liver
41	chr10:96569800-96570000	ZNF genes & repeats	Fetal Intestine Small	intestine
42	chr10:96570400-96570800	Weak transcription	Fetal Intestine Small	intestine
43	chr10:96577000-96580200	Weak transcription	Fetal Intestine Small	intestine
44	chr10:96580200-96581000	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr10:96580200-96581600	Strong transcription	Liver	Liver
46	chr10:96580200-96582200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
47	chr10:96581600-96581800	ZNF genes & repeats	Liver	Liver
48	chr10:96581600-96582600	ZNF genes & repeats	Fetal Intestine Large	intestine
49	chr10:96581800-96584400	Strong transcription	Liver	Liver
50	chr10:96582200-96591800	Weak transcription	Duodenum Mucosa	Duodenum

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