Variant report

Variant	nsv895990
Chromosome Location	chr10:110354980-110452911
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:110379538..110381981-chr10:110384603..110386733,2	MCF-7	breast:
2	chr10:110367562..110370011-chr10:110375438..110378123,2	K562	blood:
3	chr10:110341253..110342207-chr10:110358545..110359102,2	MCF-7	breast:
4	chr10:110367562..110370011-chr10:110375438..110378123,2	K562	blood:
5	chr10:110379538..110381981-chr10:110384603..110386733,2	MCF-7	breast:

Extended variants
information (count: 1635 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:1635 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2225535	chr10:110354980-110354981	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs534523374	chr10:110355027-110355028	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs371101039	chr10:110355028-110355029	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs565901380	chr10:110355057-110355058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs534873980	chr10:110355077-110355078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs557958161	chr10:110355086-110355087	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs72825954	chr10:110355096-110355097	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs537790914	chr10:110355138-110355139	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs557035548	chr10:110355144-110355145	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184519294	chr10:110355161-110355162	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs543117560	chr10:110355187-110355188	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs35826636	chr10:110355193-110355194	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs79662620	chr10:110355199-110355200	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs573407302	chr10:110355215-110355216	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs545198361	chr10:110355216-110355217	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs373788379	chr10:110355241-110355242	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs565131734	chr10:110355256-110355257	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs17124846	chr10:110355317-110355318	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs11194187	chr10:110355337-110355338	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs11194188	chr10:110355362-110355363	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs529714565	chr10:110355370-110355371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs546224756	chr10:110355375-110355376	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs189228439	chr10:110355380-110355381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs538394040	chr10:110355454-110355455	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs192553141	chr10:110355468-110355469	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs571823721	chr10:110355497-110355498	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs11194189	chr10:110355499-110355500	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs557660238	chr10:110355513-110355514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs140526436	chr10:110355518-110355519	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs144180695	chr10:110355534-110355535	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs11194190	chr10:110355560-110355561	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs371053959	chr10:110355650-110355651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs112740326	chr10:110355659-110355660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545556510	chr10:110355678-110355679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs114695812	chr10:110355724-110355725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77596586	chr10:110355736-110355737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs116989981	chr10:110355800-110355801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs146577967	chr10:110355856-110355857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs78993499	chr10:110355889-110355890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs140988532	chr10:110355922-110355923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs74155855	chr10:110355923-110355924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184902595	chr10:110356032-110356033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550709952	chr10:110356066-110356067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs532040802	chr10:110356164-110356165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs150255002	chr10:110356184-110356185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs189062772	chr10:110356197-110356198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs113342510	chr10:110356223-110356224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs531153613	chr10:110356247-110356248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs373151634	chr10:110356275-110356276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550926209	chr10:110356307-110356308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:146 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110351400-110355200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:110351600-110356600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:110352600-110355600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:110353000-110355600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:110354000-110355000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:110354000-110355000	Enhancers	GM12878-XiMat	blood
7	chr10:110354200-110355000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:110354800-110357800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:110354800-110358800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:110355000-110357800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:110355000-110358200	Weak transcription	GM12878-XiMat	blood
12	chr10:110355600-110357800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:110355600-110357800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:110356600-110362200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:110356800-110359000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:110357000-110357800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr10:110357000-110357800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
18	chr10:110357600-110357800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr10:110357600-110357800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr10:110357600-110358200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
21	chr10:110357600-110358400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr10:110357600-110358400	Enhancers	Fetal Kidney	kidney
23	chr10:110357600-110358600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
24	chr10:110357800-110358000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
25	chr10:110357800-110358000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
26	chr10:110357800-110358000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
27	chr10:110357800-110358000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
28	chr10:110357800-110358000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
29	chr10:110357800-110358000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:110357800-110358200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
31	chr10:110357800-110358600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:110357800-110358600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:110357800-110358600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:110357800-110358600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:110357800-110358600	Enhancers	Pancreas	Pancrea
36	chr10:110357800-110358600	Enhancers	Spleen	Spleen
37	chr10:110357800-110358800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:110357800-110359000	Enhancers	Liver	Liver
39	chr10:110357800-110359200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:110357800-110360000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:110358000-110358400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
42	chr10:110358000-110358400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
43	chr10:110358000-110358400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
44	chr10:110358000-110358400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
45	chr10:110358000-110359000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
46	chr10:110358000-110359000	Enhancers	HepG2	liver
47	chr10:110358200-110358400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
48	chr10:110358200-110358400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
49	chr10:110358200-110358600	Enhancers	NH-A	brain
50	chr10:110358200-110359000	Active TSS	GM12878-XiMat	blood

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