Variant report

Variant	nsv897081
Chromosome Location	chr11:24130487-24231257
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:24160485..24163375-chr11:24163857..24165450,2	MCF-7	breast:
2	chr11:24202163..24204133-chr11:24208051..24210770,2	MCF-7	breast:
3	chr11:24160485..24163375-chr11:24163857..24165450,2	MCF-7	breast:
4	chr11:23561735..23562349-chr11:24176838..24178049,3	MCF-7	breast:
5	chr11:23993865..23994676-chr11:24177072..24177577,2	MCF-7	breast:
6	chr11:24202163..24204133-chr11:24208051..24210770,2	MCF-7	breast:
7	chr11:24221833..24223887-chr11:24233684..24236438,2	K562	blood:

Extended variants
information (count: 953 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:953 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536039017	chr11:24136516-24136517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs546459664	chr11:24136578-24136579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs116167553	chr11:24136630-24136631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs188119776	chr11:24136672-24136673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs146520049	chr11:24136705-24136706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs575240948	chr11:24136727-24136728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537504043	chr11:24136736-24136737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs554709013	chr11:24136742-24136743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs192648698	chr11:24136775-24136776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs544652393	chr11:24136782-24136783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs543259472	chr11:24136786-24136787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs556084386	chr11:24136802-24136803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs184992951	chr11:24136827-24136828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs371669966	chr11:24136928-24136929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs141157083	chr11:24136993-24136994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs545732646	chr11:24136994-24136995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs560636679	chr11:24137049-24137050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs188137564	chr11:24137127-24137128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530941397	chr11:24137155-24137156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs144880925	chr11:24137181-24137182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561066059	chr11:24137182-24137183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200003375	chr11:24137192-24137193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs202046057	chr11:24137198-24137199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs397849449	chr11:24137199-24137200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs76472342	chr11:24137200-24137201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs529802269	chr11:24137203-24137204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs75243536	chr11:24137244-24137245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10767161	chr11:24137246-24137247	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs191441976	chr11:24137259-24137260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs114350152	chr11:24137268-24137269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552455066	chr11:24137287-24137288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs568715119	chr11:24137288-24137289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs560598256	chr11:24137295-24137296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs537870189	chr11:24137381-24137382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs35314865	chr11:24137476-24137477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs7934530	chr11:24137480-24137481	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs184551267	chr11:24137494-24137495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs371607304	chr11:24137536-24137537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs545743643	chr11:24137538-24137539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs528016716	chr11:24137550-24137551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553603819	chr11:24137559-24137560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs189339820	chr11:24137587-24137588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370571976	chr11:24137602-24137603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs374418451	chr11:24137638-24137639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs34294716	chr11:24137683-24137684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs545334130	chr11:24137700-24137701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs559205003	chr11:24137746-24137747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs35359436	chr11:24137759-24137760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs397822040	chr11:24137765-24137766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs181699459	chr11:24137772-24137773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24136400-24140400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:24143800-24144200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:24159000-24159800	Enhancers	HUVEC	blood vessel
4	chr11:24163600-24164600	Enhancers	Dnd41	blood
5	chr11:24163600-24164800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:24171600-24172000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:24171800-24172000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:24171800-24172000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:24176400-24177000	Enhancers	Pancreas	Pancrea
10	chr11:24176600-24177200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:24176600-24177400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:24177400-24178000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:24188600-24189400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:24203000-24203600	Enhancers	Dnd41	blood
15	chr11:24206200-24211800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:24211800-24213200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:24212400-24213600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chr11:24216400-24216600	ZNF genes & repeats	Right Atrium	heart
19	chr11:24219800-24220400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr11:24220000-24220600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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